View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5087-Insertion-3 (Length: 561)
Name: NF5087-Insertion-3
Description: NF5087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5087-Insertion-3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 11 - 512
Target Start/End: Complemental strand, 19198763 - 19198258
Alignment:
| Q |
11 |
atcagcagcctagtaagttcagaaaaacgagggataaaatttcatttgaccttgtgtaaaaactgtcttgaccattatcagcagagaagaaaaagggcca |
110 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19198763 |
atcagcagcctagtcagttcagaaaaacgagggataaaatttcatttgacctcgtgtaaaaactgtcttgaccattttcagcagagaagaaaaagggcca |
19198664 |
T |
|
| Q |
111 |
gagttggttacaaaaacagctttcaagtaaaacaggtcgtgattgcgactacatagatatggtgcatggtgcagcagtagctgctgctgcattctcaatt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19198663 |
gagttggttacaaaaacagctttcaagtaaaacaggtcgtgattgcgactacatagatatggtgcatggtgcagcagtagctgctgctgcattctcaatt |
19198564 |
T |
|
| Q |
211 |
aatttgcaagagacctctgagcagaagagtgagaccccggaggcctcattggccaaggtcaaaagcaaggtagacagctcaaaatcttcaaagtcccttc |
310 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19198563 |
aatttgcaatagacctctgagcagaagagtgagaccccggaggcctcattggccaaggtcaaaagcaaggtagacagctcaaaatcttcaaagtcccttc |
19198464 |
T |
|
| Q |
311 |
tcagtagtatatccaagcgattatcaggtaaagatgagcacataccactccatttatgaatcataattaccatt----tttaagtnnnnnnnnnnnnnnn |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19198463 |
tcagtagtatatccaagcgattatcaggtaaagatgagcacataccactccatttatgaatcataattaccattactctttaagtaaaaaaacaaaaaca |
19198364 |
T |
|
| Q |
407 |
nnntcaagtttattaaactttgtctgcatcatgtttaggttcttttagatctaaagatgaccaagctgtagaagaaaagaaaccggaaaaggccattacc |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
19198363 |
aaatcaagtttattaaactttgtctgcatcatgtttaggttcttttagatctaaagatgaccaagttgtagaagaaaagaaaccggaaaaggccattacc |
19198264 |
T |
|
| Q |
507 |
cctgca |
512 |
Q |
| |
|
|||||| |
|
|
| T |
19198263 |
cctgca |
19198258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 70 - 469
Target Start/End: Complemental strand, 19202775 - 19202375
Alignment:
| Q |
70 |
aaactgtcttgaccattatcagcagagaagaaaaagggccagagttggttacaaaaacagctttcaagtaaaacaggtcgtgattgcgactacatagata |
169 |
Q |
| |
|
||||||| | |||||| |||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| ||||||| |||||||||||| | |
|
|
| T |
19202775 |
aaactgtgtcgaccatgttcagcagagaagaagaagggccagaattggttgcaaaaacagctttcaagtaaaacaggccgtgattacgactacatagaaa |
19202676 |
T |
|
| Q |
170 |
tggtgcatggtgcagcagtagctgctgctgcattctcaattaatttgcaagagacctctgagcagaagagtgagaccccggaggcctcattggccaaggt |
269 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19202675 |
tggtgcatgctgcagcagtagctgctgctgcattatcaattaatttgcaagagacatttgagcagaagagtgagaccccggaggcctcatcggccaaggt |
19202576 |
T |
|
| Q |
270 |
caaaagcaaggtagacagctcaaaatcttcaaagtcccttctcagtagtatatccaagcgattatcaggtaaagatgagcacataccactccatttatga |
369 |
Q |
| |
|
||||||||| | |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| || ||||||||||| |
|
|
| T |
19202575 |
caaaagcaacatggacagcacaaaatcttcaaagtcccttctcagtagtgcatccaagcgattatcaggtaaagttgagcacatagcagtccatttatga |
19202476 |
T |
|
| Q |
370 |
atcataattacc---atttttaagtnnnnnnnnnnnnnnnnnntcaagtttattaaactttgtctgcatcatgtttaggttcttttagatctaaagatga |
466 |
Q |
| |
|
|||||||||| | ||| |||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19202475 |
atcataattatcattattcttaagt--aaaaaaacaaaaaaaatcaagtttattaaacttagtctgcatcatgtttaggttcatttagatctaaagatga |
19202378 |
T |
|
| Q |
467 |
cca |
469 |
Q |
| |
|
||| |
|
|
| T |
19202377 |
cca |
19202375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 475 - 532
Target Start/End: Complemental strand, 19202345 - 19202288
Alignment:
| Q |
475 |
tagaagaaaagaaaccggaaaaggccattacccctgcattatcaatgaaaaagacttc |
532 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||| |||||||||||||||||| |
|
|
| T |
19202345 |
tagaagaaaagaaaccggaaaaagccattactcctgcaccatcaatgaaaaagacttc |
19202288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University