View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5087-Insertion-4 (Length: 526)
Name: NF5087-Insertion-4
Description: NF5087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5087-Insertion-4 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0038 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 201 - 526
Target Start/End: Original strand, 9830784 - 9831117
Alignment:
| Q |
201 |
ccactttaccaccccatattgttcaacttatcaaattaaaaataatattttctaaagtaaaacttgatactatgattcactttacctattatt------- |
293 |
Q |
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| T |
9830784 |
ccactttaccaccccatattgttcaacttatcaaattaaaaataatattttctaaagtaaaacttgatactatgattcactttacctattattcaagtgg |
9830883 |
T |
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| Q |
294 |
-taaacataattatttttattactttaataaataactacgaagaagatataaacaatatttcgtaaattcattctcaggttttaggaaaaatacactcat |
392 |
Q |
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| T |
9830884 |
ataaacataattatttttattactttaataaataactacgaagaagatataaacaatatttcgtaaattcattctcaggttttaggaaaaatacactcat |
9830983 |
T |
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| Q |
393 |
gattgttcgttttccatattgcaagataaaagtaataaaagaatgttcatattaaatttgaccacataacttttcaattataattttgttgttttgcatt |
492 |
Q |
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| T |
9830984 |
gattgttcgtttttcatattgcaagataaaagtaataaaagaatgttcatattaaatttgaccacataacttttcaattataattttgttgttttgcatt |
9831083 |
T |
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| Q |
493 |
cgttctttaacatcccaaatggtcaatccgttta |
526 |
Q |
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| T |
9831084 |
cgttctttaacatcccaaatggtcaatccgttta |
9831117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 9830591 - 9830751
Alignment:
| Q |
8 |
acatgcatgcatcccacaaagggaactgagtatattaacgttcttcattatacccattgaaatatttatatatatgattgagaggaaaactgaaaattta |
107 |
Q |
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| T |
9830591 |
acatgcatgcatcccagaaagggaactgagtatattaatgttcttcattatacccattgaaatatttatatatatgattgagaggaaaactgaaaattta |
9830690 |
T |
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| Q |
108 |
acagaccataatagattttcctatcgctaaaacatgaattcttatgattgtagctgatatt |
168 |
Q |
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| T |
9830691 |
acagaccataatagattttcttatcgctaaaacatgaattcttatgattgcagctgatatt |
9830751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 297 - 405
Target Start/End: Complemental strand, 28116368 - 28116260
Alignment:
| Q |
297 |
acataattatttttattactttaataaataactacgaagaagatataaacaatatttcgtaaattcattctcaggttttaggaaaaatacactcatgatt |
396 |
Q |
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||||||||||||| ||||| ||||||| |||||| ||||||||||||||||||||| |||||||||| || ||||||||| | ||| |||||| || || |
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| T |
28116368 |
acataattattttcattacattaataacaaactactaagaagatataaacaatattttgtaaattcatgcttaggttttagcagaaacacactcgtgctt |
28116269 |
T |
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| Q |
397 |
gttcgtttt |
405 |
Q |
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|||| |||| |
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| T |
28116268 |
gttcttttt |
28116260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 295 - 405
Target Start/End: Complemental strand, 28200163 - 28200055
Alignment:
| Q |
295 |
aaacataattatttttattactttaataaataactacgaagaagatataaacaatatttcgtaaattcattctcaggttttaggaaaaatacactcatga |
394 |
Q |
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||||||||||||||| ||||| |||||||| |||||| |||||||||||||||||||| ||| |||||| || ||||||||| | ||| ||||||||| |
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| T |
28200163 |
aaacataattattttcattacattaataaaaaactacaaagaagatataaacaatatt--gtatattcatgcttaggttttagcataaacgcactcatga |
28200066 |
T |
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| Q |
395 |
ttgttcgtttt |
405 |
Q |
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| T |
28200065 |
tttttcttttt |
28200055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 295 - 405
Target Start/End: Complemental strand, 661 - 553
Alignment:
| Q |
295 |
aaacataattatttttattactttaataaataactacgaagaagatataaacaatatttcgtaaattcattctcaggttttaggaaaaatacactcatga |
394 |
Q |
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||||||||||||||| ||||| |||||||| |||||| |||||||||||||||||||| ||| |||||| || ||||||||| | ||| ||||||||| |
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| T |
661 |
aaacataattattttcattacattaataaaaaactacaaagaagatataaacaatatt--gtatattcatgcttaggttttagcataaacgcactcatga |
564 |
T |
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| Q |
395 |
ttgttcgtttt |
405 |
Q |
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|| ||| |||| |
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| T |
563 |
tttttcttttt |
553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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