View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5087-Insertion-5 (Length: 347)
Name: NF5087-Insertion-5
Description: NF5087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5087-Insertion-5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 8 - 347
Target Start/End: Original strand, 4355851 - 4356190
Alignment:
| Q |
8 |
aacaatgctgaggttgccaagagaagccattagaggttgccataccatgactaacatgggcatatttaattggggtaaggtgtcaagctcgaaacgatct |
107 |
Q |
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| T |
4355851 |
aacaatgctgaggttgccaagagaagccattagaggttgccataccatgactaacatgggcatatttaattggggtaaggtgtcaagctcgaaacgatct |
4355950 |
T |
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| Q |
108 |
atttgtttggtgaaagtaagaaagtcagtttttactgtttggtatttgaaagattatgagtcgagttcatggcagaaagtgttgaaagttagagtgagag |
207 |
Q |
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| T |
4355951 |
atttgtttggtgaaagtaagaaagtcagtttttactgtttggtatttgaaagattatgagtcgagttcatggcagaaagtgttgaaagttagagtgagag |
4356050 |
T |
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| Q |
208 |
gactaggattacaagagaaaaatcctcaagttaccgggtttacagttacaaatggagatctcttggtttttgctactgaagaaaaagtttatagttgtgg |
307 |
Q |
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| T |
4356051 |
gactaggattacaagagaaaaatcctcaagttaccgggtttacagttacaaatggagatatcttggtttttgctactgaagaaaaagtttatagttgtgg |
4356150 |
T |
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| Q |
308 |
tttgaatgaagaaagatttatgatggtagaggaaataggg |
347 |
Q |
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| T |
4356151 |
tttgaatgaagaaagatttatgatggtcgaggaaataggg |
4356190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 8 - 347
Target Start/End: Complemental strand, 4675061 - 4674722
Alignment:
| Q |
8 |
aacaatgctgaggttgccaagagaagccattagaggttgccataccatgactaacatgggcatatttaattggggtaaggtgtcaagctcgaaacgatct |
107 |
Q |
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| T |
4675061 |
aacaatgctgaggttgccaagagaagccattagaggttgccataccatgactaacatgggcatatttaattggggtaaggtgtcaagctcgaaacgatct |
4674962 |
T |
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| Q |
108 |
atttgtttggtgaaagtaagaaagtcagtttttactgtttggtatttgaaagattatgagtcgagttcatggcagaaagtgttgaaagttagagtgagag |
207 |
Q |
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| T |
4674961 |
atttgtttggtgaaagtaagaaagtcagtttttactgtttggtatttgaaagattatgagtcgagttcatggcagaaagtgttgaaagttagagtgagag |
4674862 |
T |
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| Q |
208 |
gactaggattacaagagaaaaatcctcaagttaccgggtttacagttacaaatggagatctcttggtttttgctactgaagaaaaagtttatagttgtgg |
307 |
Q |
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| T |
4674861 |
gactaggattacaagagaaaaatcctcaagttaccgggtttacagttacaaatggagatatcttggtttttgctactgaagaaaaagtttatagttgtgg |
4674762 |
T |
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| Q |
308 |
tttgaatgaagaaagatttatgatggtagaggaaataggg |
347 |
Q |
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| T |
4674761 |
tttgaatgaagaaagatttatgatggtcgaggaaataggg |
4674722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 108 - 311
Target Start/End: Original strand, 38249535 - 38249738
Alignment:
| Q |
108 |
atttgtttggtgaaagtaagaaagtcagtttttactgtttggtatttgaaagattatgagtcgagttcatggcagaaagtgttgaaagttagagtgagag |
207 |
Q |
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| T |
38249535 |
atttgtttggtgaaattaagtaagtctgtttttactatttgggttttaaaagactatgagtcaggttcatggcaaaaagtattgaaagtgagagtaagag |
38249634 |
T |
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| Q |
208 |
gactaggattacaagagaaaaatcctcaagttaccgggtttacagttacaaatggagatctcttggtttttgctactgaagaaaaagtttatagttgtgg |
307 |
Q |
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| T |
38249635 |
cattgggattgaaggagaaagatcctaatgttagagggtttatggttatgaacggtgatcttttaatttttgctacagaagaaaaggtttacagttgcgg |
38249734 |
T |
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| Q |
308 |
tttg |
311 |
Q |
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| T |
38249735 |
tttg |
38249738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 12036860 - 12036924
Alignment:
| Q |
105 |
tctatttgtttggtgaaagtaagaaagtcagtttttactgtttggtatttgaaagattatgagtc |
169 |
Q |
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| T |
12036860 |
tctatttgtttggtgaaattaagaaattttgttttcactgtttggtttttaaaagactatgagtc |
12036924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 20657177 - 20657241
Alignment:
| Q |
105 |
tctatttgtttggtgaaagtaagaaagtcagtttttactgtttggtatttgaaagattatgagtc |
169 |
Q |
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| T |
20657177 |
tctatttgtttggtgaaattaagaaattatgttttcactgtttggtttttaaaagactatgagtc |
20657241 |
T |
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