View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5087_high_3 (Length: 378)
Name: NF5087_high_3
Description: NF5087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5087_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 369
Target Start/End: Original strand, 26309132 - 26309482
Alignment:
| Q |
19 |
tcatgctcaattatagtgcaataacctaaacaatcaaacataatcatgtaaattatattttgcttaagatcatatatgtaccacatattttgaaaaagaa |
118 |
Q |
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| T |
26309132 |
tcatgctcaagtatagtgcaataacctaaacaatcaaacataatcatgtaaattatattttgcttaagatcatatatgtaccacatattttggaaaataa |
26309231 |
T |
|
| Q |
119 |
actcacatgtatgaaatatatttagacgaatggaactcatatcttggacaatacaagctttgttctttttcaggtgaacgactctgccttttttcatgtc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26309232 |
actcacatgtatgaaatatatttagacgaatggaactcatattttggacaatacaagctttgttctttttaaggtgaacgactctgccttttttcatgtc |
26309331 |
T |
|
| Q |
219 |
caaagtcttaaaagtatctaggtccatagtctcaaagtattctttgtttggacacatgtgataagagaaaacatagtttgtgacctaacttttctttagt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26309332 |
caaagtcttaaaagtatctaggtccatagtctcaaagtattctttttttggacacatgtgataagagaaaacatagtttgtgacctaacttttctttagt |
26309431 |
T |
|
| Q |
319 |
tcccaacttgtaacagctatcacaccaacactttcctaaccttcttcatct |
369 |
Q |
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| T |
26309432 |
tcccaacttgtaacagctagcacacaaacactttcctaaccttcatcatct |
26309482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 5146541 - 5146607
Alignment:
| Q |
20 |
catgctcaattatagtgcaataacctaaacaatcaaacataatcatgtaaattatattttgcttaag |
86 |
Q |
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| T |
5146541 |
catgctcaattctagtgcaataacctagactatcaaacatgcttagggaaattaaattttgcttaag |
5146607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 16625444 - 16625404
Alignment:
| Q |
19 |
tcatgctcaattatagtgcaataacctaaacaatcaaacat |
59 |
Q |
| |
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|||||||||||| ||||||||||||||| || ||||||||| |
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| T |
16625444 |
tcatgctcaattctagtgcaataacctagactatcaaacat |
16625404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 28836928 - 28836968
Alignment:
| Q |
19 |
tcatgctcaattatagtgcaataacctaaacaatcaaacat |
59 |
Q |
| |
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|||||||||||| ||||||||||||||| || ||||||||| |
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|
| T |
28836928 |
tcatgctcaattctagtgcaataacctagactatcaaacat |
28836968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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