View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5087_low_10 (Length: 227)
Name: NF5087_low_10
Description: NF5087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5087_low_10 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 16254796 - 16254872
Alignment:
| Q |
13 |
atactcacaagccccgtttgcaatagccttcatagctgcacttgttgatccatctttacccatcactgcacatgtca |
89 |
Q |
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| T |
16254796 |
atactcacaagccccgtttgcaatagccttcatagctgcacttgttgatccatctttacccatcactgcacatgtca |
16254872 |
T |
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Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 16254937 - 16255011
Alignment:
| Q |
153 |
tcttactaatgacaggaatattgatttgttgggtaatttgttggagaaaatcataggaattcatgtctgacattt |
227 |
Q |
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| T |
16254937 |
tcttactaatgacaggaatattgatttgttgggtaatttgttggagaaaatcataggaattcatgtctgaaattt |
16255011 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 38880670 - 38880744
Alignment:
| Q |
153 |
tcttactaatgacaggaatattgatttgttgggtaatttgttggagaaaatcataggaattcatgtctgacattt |
227 |
Q |
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| T |
38880670 |
tcttactgatgacagaaatattgatttgttgggtaacatgtcggacaaaatcatatgaatccatgtctggcattt |
38880744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 38880497 - 38880564
Alignment:
| Q |
20 |
caagccccgtttgcaatagccttcatagctgcacttgttgatccatctttacccatcactgcacatgt |
87 |
Q |
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| T |
38880497 |
caagccccgtttgtaacagctttcatcactgcatttgttgatccatcatcacacatcactgcacatgt |
38880564 |
T |
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