View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5087_low_2 (Length: 397)
Name: NF5087_low_2
Description: NF5087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5087_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Original strand, 2136352 - 2136715
Alignment:
| Q |
18 |
catagaactacaaagaaaaataagcattgcctacattttataaataattaaataatataaaatccaaatgaattgttgcataaagtagataccagactcc |
117 |
Q |
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| T |
2136352 |
catagaactacaaagaaacataagcattgcctacattttataaataattaaataatataaaatccaaatgaattgttgcataaagtagataccagactcc |
2136451 |
T |
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| Q |
118 |
catcttcagatagcagtaaagctcctgcaccagcagctagtccagatatccctataactattgatataccatgaaacgcaatggtacaagaaagctgcaa |
217 |
Q |
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| T |
2136452 |
catcttcagatagcagtaaagctcctgcaccagcagctagtccagatatccctat------tgatataccatgaaatgcaatggtacaagaaagctgcaa |
2136545 |
T |
|
| Q |
218 |
atattacttttttagtgtattatctcatagataaaaaatattgtgatagtaaaactttagagttaaatatgattgttaagactttatagaggatttcaat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2136546 |
atattacttttttagtgtattatctcatagataaaaaatattgcgatagtaaaactttagagttaaatatgattgttaagactttatagaggatttcaat |
2136645 |
T |
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| Q |
318 |
ttgccagaattttatattgcataaactatatatacaaaagattttgaaaaatgaagaaaaccaagtatta |
387 |
Q |
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| T |
2136646 |
ttgccagaattttatattgcataaactatatatgcaaaagattttgaaaaatgaagaaaaccaagtatta |
2136715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 48 - 320
Target Start/End: Complemental strand, 2106362 - 2106099
Alignment:
| Q |
48 |
ctacattttataaataattaa-ataatataaaatccaaatgaattgttgcataaagtagataccagactcccatcttcagatagcagtaaagctcctgca |
146 |
Q |
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| T |
2106362 |
ctacattttataaataaatagtataatataatgtccaaatgaattgttgcacaaagtagataccagactcccatcttcagaacgcagtatagctccggca |
2106263 |
T |
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| Q |
147 |
ccagcagctagtccagatatccctataactattgatataccatgaaacgcaatggtacaagaaagctgcaaatattacttttttagtgtattatctcata |
246 |
Q |
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| T |
2106262 |
c---cagctggtccgggattccc----ac--tggctgcaccatcaaactcaaggatacaagaaagctgcaaataatatttggttattttattatctcgta |
2106172 |
T |
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| Q |
247 |
gataaaaaatattgtgatagtaaaactttagagttaaatatgattgttaagactttatagaggatttcaatttg |
320 |
Q |
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| T |
2106171 |
gataacttacattatgata-taaaactttagagttaactatgactgttaaaactttatagtggatttcaatttg |
2106099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 48 - 151
Target Start/End: Complemental strand, 2097875 - 2097771
Alignment:
| Q |
48 |
ctacattttataaataattaa-ataatataaaatccaaatgaattgttgcataaagtagataccagactcccatcttcagatagcagtaaagctcctgca |
146 |
Q |
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| T |
2097875 |
ctacattttataaataaatagtataatataatgtctaaatgaattgttgcaccaagtagataccagactcccatcttcagaacgcagtatagctccggca |
2097776 |
T |
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| Q |
147 |
ccagc |
151 |
Q |
| |
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||||| |
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| T |
2097775 |
ccagc |
2097771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 233 - 320
Target Start/End: Complemental strand, 2097461 - 2097375
Alignment:
| Q |
233 |
tgtattatctcatagataaaaaatattgtgatagtaaaactttagagttaaatatgattgttaagactttatagaggatttcaatttg |
320 |
Q |
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| T |
2097461 |
tgtattatctcatagataaattaaattatgata-taaaactttagagttaactatgattgttaaaactttatggaggatttcaatttg |
2097375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 2082436 - 2082372
Alignment:
| Q |
86 |
tgaattgttgcata--aagtagataccagactcccatcttcagatagcagtaaagctcctgcacc |
148 |
Q |
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| T |
2082436 |
tgaattgttgcatataaagtatataccagactcccatcttcagcaagcagtaaagctcctgcacc |
2082372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 2088355 - 2088224
Alignment:
| Q |
19 |
atagaactacaaagaaaaataagcattgcctacattttataaataattaaataatataaaatccaaatgaattgttgcataaagtagataccagactccc |
118 |
Q |
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||||| ||||||||||| ||||| || ||||||||||||||||| | |||||||||| || ||||||||||| |||||| | ||||| | |||| |
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| T |
2088355 |
atagagctacaaagaaacataagggttagctacattttataaataac-atataatataaagctcagatgaattgttgagtaaagttggtaccacattccc |
2088257 |
T |
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| Q |
119 |
atcttcagatagcagtaaagctcctgcaccagc |
151 |
Q |
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| T |
2088256 |
attttcagaacgcagtatagctcctgcaccagc |
2088224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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