View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5087_low_4 (Length: 370)
Name: NF5087_low_4
Description: NF5087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5087_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 22 - 353
Target Start/End: Original strand, 40005627 - 40005958
Alignment:
| Q |
22 |
ggcaaataaacaacatcctccacaggacaaccatgattaaaatccatcaccgaattcgtctcacctctaaccctaacatcccaaactttcacaaaatgat |
121 |
Q |
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| T |
40005627 |
ggcaaataaacaacatcctccacaggacaaccatgattaaaatccatcaccgaattcgtctcacctctaaccctaacatcccaaactttcacaaaatgat |
40005726 |
T |
|
| Q |
122 |
cataagagccagtaacaaaactatcagaactaacaggcgacgaatcaccacacctaacataatccttatggccacgaaacaccatgaacggagtttcctc |
221 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40005727 |
cataagagccagtaacaaaactatcagaactaaccggcgacgaatcaccacacctaacataatccttatggccacgaaacaccatgaacggagtttcctc |
40005826 |
T |
|
| Q |
222 |
agcaacatcccaatacctaacaaccgcatcatcactgccagaaactaaatgcaacttatcatgacgcggataatgaacaaacctaacaggacgattgttt |
321 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40005827 |
agcaacatcccaatacctaacaacagcatcatcactgccagaaactaaatgcaacttatcatgacgcggataatgaacaaacctaacaggacgattgttt |
40005926 |
T |
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| Q |
322 |
gaactaagacgacggagacgggtacgtgtttt |
353 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
40005927 |
gaactaagacgacggagacgggtacgtgtttt |
40005958 |
T |
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