View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5087_low_8 (Length: 241)

Name: NF5087_low_8
Description: NF5087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5087_low_8
NF5087_low_8
[»] chr7 (3 HSPs)
chr7 (1-200)||(12237790-12237988)
chr7 (14-87)||(41139102-41139175)
chr7 (195-223)||(12238008-12238036)
[»] chr3 (3 HSPs)
chr3 (4-87)||(36331723-36331806)
chr3 (14-87)||(38555035-38555107)
chr3 (13-111)||(43598790-43598887)
[»] chr8 (2 HSPs)
chr8 (6-68)||(11172369-11172431)
chr8 (24-80)||(42688078-42688134)
[»] chr4 (4 HSPs)
chr4 (4-72)||(1297883-1297951)
chr4 (4-55)||(4045065-4045116)
chr4 (4-80)||(3442865-3442941)
chr4 (4-80)||(56546446-56546522)
[»] chr1 (2 HSPs)
chr1 (4-80)||(24662004-24662080)
chr1 (4-87)||(8227963-8228047)
[»] chr5 (3 HSPs)
chr5 (4-87)||(6806637-6806720)
chr5 (14-87)||(37303949-37304022)
chr5 (4-80)||(2029125-2029201)
[»] chr2 (2 HSPs)
chr2 (6-49)||(20451855-20451898)
chr2 (40-80)||(2558291-2558331)


Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 12237790 - 12237988
Alignment:
Q  1 acaagaattcactttttaaattgaataagtgaagtgtttagggttcgaatcctgaccccgacatataataatccattgtctctgccacctaagatatgat 100  Q
    |||||||||||||||||||| |||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||| || ||||||||||||    
T  12237790 acaagaattcactttttaaagtgaataagtgaagtgtctaggattcgaaccctgaccccgacatataataatccattgtctctgtcaactaagatatgat 12237889  T
Q  101 cacagagacattaaactatagatctattccttcaattgaatcaagttaataaatgcaatttatgtctagttctggaataaatgcatcaatcaggtagttt 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  12237890 cacatagacattaaactatagatctattccttcaattgaatcaagttaataaatgcaatttatgcctagttctggaat-aatgcatcaatcaggtagttt 12237988  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 41139175 - 41139102
Alignment:
Q  14 ttttaaattgaataagtgaagtgtttagggttcgaatcctgaccccgacatataataatccattgtctctgcca 87  Q
    ||||||| ||||||||||||||||   || |||||| || ||||||  ||||||||||| ||||||| ||||||    
T  41139175 ttttaaagtgaataagtgaagtgtccgggattcgaaccccgacccctgcatataataatgcattgtccctgcca 41139102  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 12238008 - 12238036
Alignment:
Q  195 tagtttttagtgggtcgcaactgcagatt 223  Q
    |||||||||||||||||||||||||||||    
T  12238008 tagtttttagtgggtcgcaactgcagatt 12238036  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 36331723 - 36331806
Alignment:
Q  4 agaattcactttttaaattgaataagtgaagtgtttagggttcgaatcctgaccccgacatataataatccattgtctctgcca 87  Q
    ||||||||||||||||| ||||||||||  ||||   ||||||||| || ||||||  ||||||||||| ||||||| ||||||    
T  36331723 agaattcactttttaaagtgaataagtggggtgtccggggttcgaaccccgacccctgcatataataatgcattgtccctgcca 36331806  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 38555035 - 38555107
Alignment:
Q  14 ttttaaattgaataagtgaagtgtttagggttcgaatcctgaccccgacatataataatccattgtctctgcca 87  Q
    ||||||| ||||||||||| ||||||  |||||||| || ||||||  ||||||||||| ||||||||||||||    
T  38555035 ttttaaagtgaataagtgaggtgtttgaggttcgaaccc-gacccctgcatataataatgcattgtctctgcca 38555107  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 43598887 - 43598790
Alignment:
Q  13 tttttaaattgaataagtgaagtgtttagggttcgaatcctgaccccgacatataataatccattgtctctgccacctaagatatgatcacagagacat 111  Q
    |||||||| ||||||||||  |||||  | ||||||| || |||| |  ||||||||||| |||||||||||||| ||||  ||||||||| |||||||    
T  43598887 tttttaaagtgaataagtggggtgttc-gagttcgaaccccgacctctgcatataataatgcattgtctctgccaactaaactatgatcacggagacat 43598790  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 11172431 - 11172369
Alignment:
Q  6 aattcactttttaaattgaataagtgaagtgtttagggttcgaatcctgaccccgacatataa 68  Q
    |||||||||||||| |||||||| ||  ||||| |||||||||| ||||||||| ||||||||    
T  11172431 aattcactttttaagttgaataaatggggtgttcagggttcgaaccctgacccctacatataa 11172369  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 42688134 - 42688078
Alignment:
Q  24 aataagtgaagtgtttagggttcgaatcctgaccccgacatataataatccattgtc 80  Q
    ||||||||  |||||  |||||||||||| |||||| |||||||||||| |||||||    
T  42688134 aataagtggggtgttcggggttcgaatcccgacccctacatataataatgcattgtc 42688078  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 1297951 - 1297883
Alignment:
Q  4 agaattcactttttaaattgaataagtgaagtgtttagggttcgaatcctgaccccgacatataataat 72  Q
    ||||||||| || |||  |||||||||| |||||| ||||||||||||| ||||||  |||||||||||    
T  1297951 agaattcaccttataaggtgaataagtggagtgttcagggttcgaatcccgacccctgcatataataat 1297883  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 4045065 - 4045116
Alignment:
Q  4 agaattcactttttaaattgaataagtgaagtgtttagggttcgaatcctga 55  Q
    ||||||||||||||||| ||||||||||  |||||| ||||||||| |||||    
T  4045065 agaattcactttttaaagtgaataagtggggtgtttggggttcgaaccctga 4045116  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 3442941 - 3442865
Alignment:
Q  4 agaattcactttttaaattgaataagtgaagtgtttagggttcgaatcctgaccccgacatataataatccattgtc 80  Q
    ||||||||| || |||  ||||||||||  |||| | ||||||||| || | ||||||||||||||||| |||||||    
T  3442941 agaattcaccttataaggtgaataagtggggtgtctggggttcgaaccccggccccgacatataataatgcattgtc 3442865  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 56546446 - 56546522
Alignment:
Q  4 agaattcactttttaaattgaataagtgaagtgtttagggttcgaatcctgaccccgacatataataatccattgtc 80  Q
    ||||||||||||||||| ||||||||||  |||| |  |||||||| || | ||||  ||||||||||| |||||||    
T  56546446 agaattcactttttaaagtgaataagtggggtgtctgtggttcgaaccccggcccctgcatataataatgcattgtc 56546522  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 24662080 - 24662004
Alignment:
Q  4 agaattcactttttaaattgaataagtgaagtgtttagggttcgaatcctgaccccgacatataataatccattgtc 80  Q
    ||||||||| || ||| |||||||| ||  |||| | |||||||||||||||||||  ||||||||||| |||||||    
T  24662080 agaattcaccttataagttgaataaatggggtgtctggggttcgaatcctgacccctgcatataataatgcattgtc 24662004  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 8228047 - 8227963
Alignment:
Q  4 agaattcactttttaaat--tgaataagtgaagtgtttagggttcgaatcctgaccccgacatataataatccattgtctctgcca 87  Q
    ||||||||||||||| |   ||||||| ||| ||||| |||||||||||||  |||||  |||||||||||||| |||||||||||    
T  8228047 agaattcactttttacaaggtgaataaatgaggtgttcagggttcgaatcccaacccctgcatataataatcca-tgtctctgcca 8227963  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 6806637 - 6806720
Alignment:
Q  4 agaattcactttttaaattgaataagtgaagtgtttagggttcgaatcctgaccccgacatataataatccattgtctctgcca 87  Q
    ||||||||| || |||  |||||||||| |||||   |||||||||||| ||||||  ||||||| ||| ||||||||||||||    
T  6806637 agaattcaccttataatgtgaataagtggagtgtccggggttcgaatcccgacccctgcatataacaatgcattgtctctgcca 6806720  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 37304022 - 37303949
Alignment:
Q  14 ttttaaattgaataagtgaagtgtttagggttcgaatcctgaccccgacatataataatccattgtctctgcca 87  Q
    ||||||| ||||||||||  ||||  |||||||||| || ||||||  ||||||||||| ||||||| ||||||    
T  37304022 ttttaaagtgaataagtggggtgtccagggttcgaaccccgacccctgcatataataatacattgtccctgcca 37303949  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 2029125 - 2029201
Alignment:
Q  4 agaattcactttttaaattgaataagtgaagtgtttagggttcgaatcctgaccccgacatataataatccattgtc 80  Q
    ||||||||| || |||  ||||||||||  |||||  |||||||||||| ||||||  ||||||||||| |||||||    
T  2029125 agaattcaccttataaggtgaataagtggggtgttcggggttcgaatcccgacccctgcatataataatacattgtc 2029201  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 20451855 - 20451898
Alignment:
Q  6 aattcactttttaaattgaataagtgaagtgtttagggttcgaa 49  Q
    ||||||||||||||| |||||||||| ||||||| |||||||||    
T  20451855 aattcactttttaaagtgaataagtggagtgtttggggttcgaa 20451898  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 2558291 - 2558331
Alignment:
Q  40 agggttcgaatcctgaccccgacatataataatccattgtc 80  Q
    |||||||||| ||||||||| |||||||||||| |||||||    
T  2558291 agggttcgaaccctgacccctacatataataatgcattgtc 2558331  T

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