View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5088-Insertion-1 (Length: 1024)
Name: NF5088-Insertion-1
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088-Insertion-1 |
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| [»] scaffold0457 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 491 - 1000
Target Start/End: Complemental strand, 43804537 - 43804024
Alignment:
| Q |
491 |
tgaagaccttttgcgttatattcgattgcttcacttgaaaggcttaaatatgatgccatagcctcagttgctgctaaatttacatacttttttcgcaatg |
590 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43804537 |
tgaagaccttttgcgttatattcgattgcttcacttgaaaggcttaaatatgatgtcatagcctcagttgctgctaaatttacatacttttttcgcaatg |
43804438 |
T |
|
| Q |
591 |
tagaaactgctattctggtgacatcgattacaccatggacattgggtgtcgatattattaacccctatgtcaaccaatctagagtgtgtaggcagacaat |
690 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43804437 |
tagaaactgctattctggtgacatcgattacaccatggacattgggtgtcgatattattaacccctatgtcaaccaatctagagtgtgtaggcagacaat |
43804338 |
T |
|
| Q |
691 |
tctttgttgtaccttcgaatgaacgattagctgccacaaggtctatcaacttcctataactgtcaaatttgtatttttgacatgcttagtcaagcaaaac |
790 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43804337 |
tctttgttgtaccttcgaatgaacaattagctgccacaaggtctatcaacttcctataactgtcaaatttgtatttttgacaagcttagtcaagcaaaac |
43804238 |
T |
|
| Q |
791 |
c-atatgtcgagcgcagactatactcgccatggatatggtttccaaattagttccatcgtagaccacaaagttaaatagaggagttcagacaacatcact |
889 |
Q |
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| T |
43804237 |
caatatgttgagcgcagactatactcgccatggatatggtttccaaattagtt-catcgtagaccacaaagttaaatagaggagttcagacaacatcatt |
43804139 |
T |
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| Q |
890 |
aacagactgaaggctcaattataccccacaaagcctgga-ggtatttttacaaataatg-aaaacctcaacataaaaagcctggatacctttcta--cta |
985 |
Q |
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|||||||||||||||||| |||| | ||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| |
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| T |
43804138 |
aacagactgaaggctcaaatata-cacacaaagcctggatgttatttttacaaataatgaaaaacctcaacataaaaagcctggatatctttctaaccta |
43804040 |
T |
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| Q |
986 |
tc-agaaaaacctgga |
1000 |
Q |
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|| ||||||||||||| |
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| T |
43804039 |
tcaagaaaaacctgga |
43804024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 13 - 489
Target Start/End: Complemental strand, 43805105 - 43804637
Alignment:
| Q |
13 |
atgcatttcaggtatatggtcaccttaacaaggttatgagcaaccatattagtttctctcctaactaaaagttgttataaaacaatgataaaatactaca |
112 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
43805105 |
atgcatttcag-tatatggtcaccttaacaaggttatgagcaaccatattagtttctctcctaactaaaagttgttatagaacgatgataaaatactaca |
43805007 |
T |
|
| Q |
113 |
acatctacttaaaatgcaacctatttcgattctatcatttgactaacaagttaaaacgttcacaacagtctttgaatctaaagtaaagataactggtttg |
212 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43805006 |
---tctacttaaaatgcaacctatctcgattctatcatttgactaacaagttaaaacgttcacaacagtctttgaatctaaagtaaagataactggtttg |
43804910 |
T |
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| Q |
213 |
aactctaatttttgtatccactcgatagctgccaataagacgggagcctcacctccttaacattcaagataggttgcacccacaaagtttttctcccata |
312 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43804909 |
aactctaatttttgtatccact----agctgccaataagacggaagcctcacctccttaacattcaagataggttgcacccacaaagtttttctcccata |
43804814 |
T |
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| Q |
313 |
aatatttcatatgcgtcccttacgcaaatctcaattccaatctaattgtgctgctcagaaatagacgtgtcgctgccatgtttgtccattctgaacaggc |
412 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43804813 |
aatatttcatatgcgtcccttaagcaaatctcaattccaatctaattgtgctgctcagaaatagacgtgtcgctgccatgtttgaccattctgaacaggc |
43804714 |
T |
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| Q |
413 |
tgttgtagacgagcagcctgcccattttcctgatgcaccaccctccactctctaagtaaaatattaccacgataaat |
489 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43804713 |
tgttgtagacgagcagcctgtccattttcctgatgcaccaccctccactctctaagtaaaatattaccacgataaat |
43804637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 352
Target Start/End: Original strand, 3517 - 3697
Alignment:
| Q |
174 |
acaacagtctttgaatctaaagtaaagataactggtttgaactctaatttttgtatccactcgatagctgccaataagacgggagcctca-cctccttaa |
272 |
Q |
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|||||| |||| |||| |||||||||||| | | ||||||||| ||| | | ||||||| ||| ||||| |||||| ||| ||||||| |||| |||| |
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| T |
3517 |
acaacactcttcaaatccaaagtaaagatagtttgcttgaactcttattctcgcatccacttgattgctgctaataagtcggaagcctcaccctcattaa |
3616 |
T |
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| Q |
273 |
cattcaagataggttgcacccacaaagt-ttttctcccataaatatttcatatgcgtcccttacgcaaatctcaattccaa |
352 |
Q |
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||||||| ||| | ||| | |||||| ||| |||||||||| |||||||| ||||||||| ||||||| ||||||||| |
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| T |
3617 |
cattcaaaatatatcgcaactgcaaagtctttgctcccataaacatttcatactcgtcccttaagcaaatcccaattccaa |
3697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 45039306 - 45039197
Alignment:
| Q |
113 |
acatctacttaaaatgcaacctatttcgattctatcatttgactaacaagttaaaac-gttcacaacagtctttgaatctaaagtaaagataactggttt |
211 |
Q |
| |
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|||||||||||||||| |||||| || ||||||| ||| |||| | | ||||||| ||||||| || |||||||||| | |||||| |||||| |||| |
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| T |
45039306 |
acatctacttaaaatggaacctacctctattctattatt-gactcataggttaaaagagttcacagcactctttgaatcaagagtaaaaataacttgttt |
45039208 |
T |
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| Q |
212 |
gaactctaatt |
222 |
Q |
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||||||||||| |
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| T |
45039207 |
gaactctaatt |
45039197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 290
Target Start/End: Complemental strand, 2442074 - 2441964
Alignment:
| Q |
181 |
tctttgaatctaaagtaaagataactggtttgaactctaatttttgtatccactcgatagctgccaataagacgggagcctca-cctccttaacattcaa |
279 |
Q |
| |
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|||| ||||||| | ||||||||||| | ||||||||||||||||| | |||||||||| ||| |||||| | |||| | |||||||||||||||| |
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| T |
2442074 |
tcttagaatctagaataaagataacttgcttgaactctaatttttgcacccactcgataattgctaataagcatgacgccttagcctccttaacattcaa |
2441975 |
T |
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| Q |
280 |
gataggttgca |
290 |
Q |
| |
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|||||||||| |
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| T |
2441974 |
cataggttgca |
2441964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 12158761 - 12158712
Alignment:
| Q |
173 |
cacaacagtctttgaatctaaagtaaagataactggtttgaactctaatt |
222 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
12158761 |
cacaacactctttgaatctaaagtaaagataactttgttgaactctaatt |
12158712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 2634013 - 2634055
Alignment:
| Q |
34 |
accttaacaaggttatgagcaaccatattagtttctctcctaa |
76 |
Q |
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||||||||||||||| |||||||||||||| | |||||||||| |
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| T |
2634013 |
accttaacaaggttacgagcaaccatattaatctctctcctaa |
2634055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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