View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5088-Insertion-11 (Length: 107)

Name: NF5088-Insertion-11
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5088-Insertion-11
NF5088-Insertion-11
[»] chr4 (9 HSPs)
chr4 (8-107)||(36425473-36425572)
chr4 (8-106)||(36411307-36411405)
chr4 (8-106)||(36416638-36416736)
chr4 (8-101)||(36403993-36404086)
chr4 (8-101)||(36397060-36397153)
chr4 (11-106)||(36368705-36368800)
chr4 (8-106)||(36373318-36373416)
chr4 (8-106)||(36387277-36387375)
chr4 (8-69)||(36433330-36433391)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 3e-45; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 3e-45
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 36425473 - 36425572
Alignment:
Q  8 cttcaatcatggaagaccgacgatgaccctggaaaaggtgcgttcacggtgaaattcagcacaattggcaagccgcagttgtttatgtacaaccgtgatg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36425473 cttcaatcatggaagaccgacgatgaccctggaaaaggtgcgttcaccgtgaaattcagcacaattggcaaaccgcagttgtttatgtacaaccgtgatg 36425572  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 36411307 - 36411405
Alignment:
Q  8 cttcaatcatggaagaccgacgatgaccctggaaaaggtgcgttcacggtgaaattcagcacaattggcaagccgcagttgtttatgtacaaccgtgat 106  Q
    |||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||||||||||| ||||    
T  36411307 cttcaatcctggaagacagatgatgaccctggaaaaggtgcgttcacggtgaaattcagcaccattggcaaaccacaattgtttatgtacaaccatgat 36411405  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 36416638 - 36416736
Alignment:
Q  8 cttcaatcatggaagaccgacgatgaccctggaaaaggtgcgttcacggtgaaattcagcacaattggcaagccgcagttgtttatgtacaaccgtgat 106  Q
    |||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||||||||||| ||||    
T  36416638 cttcaatcctggaagacagatgatgaccctggaaaaggtgcgttcacggtgaaattcagcaccattggcaaaccacaattgtttatgtacaaccatgat 36416736  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 36403993 - 36404086
Alignment:
Q  8 cttcaatcatggaagaccgacgatgaccctggaaaaggtgcgttcacggtgaaattcagcacaattggcaagccgcagttgtttatgtacaacc 101  Q
    |||||||| |||||||| || |||||||||||||||||||||||||||||| |||||||||| ||||| || || |||||||||||||||||||    
T  36403993 cttcaatcctggaagacagatgatgaccctggaaaaggtgcgttcacggtggaattcagcaccattggtaaacctcagttgtttatgtacaacc 36404086  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 36397060 - 36397153
Alignment:
Q  8 cttcaatcatggaagaccgacgatgaccctggaaaaggtgcgttcacggtgaaattcagcacaattggcaagccgcagttgtttatgtacaacc 101  Q
    |||||||| |||||||| || |||||||||||||||||||| |||||||||||||||||||  || || |  || |||||||||||||||||||    
T  36397060 cttcaatcctggaagacagaagatgaccctggaaaaggtgcattcacggtgaaattcagcagcataggtatacctcagttgtttatgtacaacc 36397153  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 6e-19
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 36368705 - 36368800
Alignment:
Q  11 caatcatggaagaccgacgatgaccctggaaaaggtgcgttcacggtgaaattcagcacaattggcaagccgcagttgtttatgtacaaccgtgat 106  Q
    |||||||||||||| || ||||||||||||||||| || |||||  ||||||||||||  ||||| || || ||||||||||||||||||| ||||    
T  36368705 caatcatggaagacagatgatgaccctggaaaaggcgcattcacattgaaattcagcagcattggaaaacctcagttgtttatgtacaaccatgat 36368800  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 36373318 - 36373416
Alignment:
Q  8 cttcaatcatggaagaccgacgatgaccctggaaaaggtgcgttcacggtgaaattcagcacaattggcaagccgcagttgtttatgtacaaccgtgat 106  Q
    |||||||| |||||||| || |||||||||||||| ||||| ||||| |||||||||| ||  |||| ||| || ||||||||||||||||||| ||||    
T  36373318 cttcaatcctggaagacagatgatgaccctggaaatggtgcattcacagtgaaattcaacagcattgtcaaacctcagttgtttatgtacaaccatgat 36373416  T

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Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 36387277 - 36387375
Alignment:
Q  8 cttcaatcatggaagaccgacgatgaccctggaaaaggtgcgttcacggtgaaattcagcacaattggcaagccgcagttgtttatgtacaaccgtgat 106  Q
    |||||||| |||||||| || |||||||||||||| ||||| ||||| |||||||||||||| |||||||| || ||  |||| |||||||||| ||||    
T  36387277 cttcaatcctggaagacggatgatgaccctggaaatggtgcattcacagtgaaattcagcaccattggcaaacctcaagtgttaatgtacaaccatgat 36387375  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 36433330 - 36433391
Alignment:
Q  8 cttcaatcatggaagaccgacgatgaccctggaaaaggtgcgttcacggtgaaattcagcac 69  Q
    |||||||| |||||||| || |||||||||||||||||||| |||||| |||||||||||||    
T  36433330 cttcaatcctggaagacagaggatgaccctggaaaaggtgccttcacgttgaaattcagcac 36433391  T

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