View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5088-Insertion-13 (Length: 146)
Name: NF5088-Insertion-13
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088-Insertion-13 |
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Alignment Details
Target: chr3 (Bit Score: 89; Significance: 3e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 2512919 - 2513035
Alignment:
| Q |
6 |
cacttgggttgtttaagtgctttgtgaactctttatttgcttttgttgcacaagtgtttcaaaattttacnnnnnnnngttaattgtttattcataaatc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2512919 |
cacttgggttgtttaagtgctttgtgaactctttatttacttttgttgcacaagtgtttcaaaattttacttttttttgttaattgtttattcataaatc |
2513018 |
T |
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| Q |
106 |
catgctactataatcaa |
122 |
Q |
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||||||||||||||||| |
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| T |
2513019 |
catgctactataatcaa |
2513035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 2509669 - 2509785
Alignment:
| Q |
6 |
cacttgggttgtttaagtgctttgtgaac--tctttatttgcttttgttgcacaagtgtttcaaaattttacnnnnnnnngttaattgtttattcataaa |
103 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| | |||||| ||||||||||||||| |||| |
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| T |
2509669 |
cacttgggttgtttaagtgctttgtgaactgtctttctttgcttttgttgcacaagtgtttcatatttttac--ttttttgttaattgtttattcttaaa |
2509766 |
T |
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| Q |
104 |
tccatgctactataatcaa |
122 |
Q |
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||||||||||| ||||||| |
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| T |
2509767 |
tccatgctactgtaatcaa |
2509785 |
T |
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