View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5088-Insertion-14 (Length: 519)
Name: NF5088-Insertion-14
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088-Insertion-14 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 369
Target Start/End: Original strand, 2571711 - 2572069
Alignment:
| Q |
11 |
attttcaaagttcaatataaaattaactattactttgtaagtaatacagttaactatttaggatttaattcatatacattgacattgtaaatgtttttca |
110 |
Q |
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| T |
2571711 |
attttcaaagttcaatataaaattaactattactttgtaagtaatacaattaactatttaggatttaattcatatacattgacattgtaaatatttttca |
2571810 |
T |
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| Q |
111 |
aactgccggttgatcaaaactattggatcgcaatggaaatttggctttggctggctttagctatgtattgtttacgtaaaaggtcatacaagtgtgaatt |
210 |
Q |
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| T |
2571811 |
aactgctggttgatcaaaactattggatcgcaatagaaatttggctttggctggctttagctatgtattgtttacgtaaaaggtcatacaagtgtgaatt |
2571910 |
T |
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| Q |
211 |
gtgatttattgaaagtatcaaaattaatctcaactacttattgcactcaggaaaatatgaaggaattatggagaaaacgacaaatacttgtataaaaaat |
310 |
Q |
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| T |
2571911 |
gtgatttattgaaagtatcaaaattaatctcaactacttattgcactcaggaaaatatgaaggaattatggagaaaacgacaaatacttgtataaaaaat |
2572010 |
T |
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| Q |
311 |
ataaatttgttagttttgaattccttaaaagttaaaacaacaactacaggatccatcaa |
369 |
Q |
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| T |
2572011 |
ataaatttgttagttttgaattccttaaaagttaaaacaacaactacaggatccatcaa |
2572069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 396 - 519
Target Start/End: Original strand, 2572067 - 2572190
Alignment:
| Q |
396 |
caacacttttctgaataaaaagttgatattcatagaaaaaggaagtaaatcattgtagtcacaaagcataactagcacgtaaaacaatatacacacatgt |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572067 |
caacacttttctgaataaaaagttgatattcatagaaaaaggaagtaaatcattgtagtcacaaagcataactagcacgtaaaacaatatacacacatgt |
2572166 |
T |
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| Q |
496 |
gacgttcaaggggaatggctattg |
519 |
Q |
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| T |
2572167 |
gacgttcaaggggaatggctattg |
2572190 |
T |
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Back To:
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