View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5088-Insertion-2 (Length: 1008)
Name: NF5088-Insertion-2
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088-Insertion-2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 527; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 100 - 871
Target Start/End: Complemental strand, 32321001 - 32320226
Alignment:
| Q |
100 |
ccctttgattcacatgcaatctccaacaacacttaat----agagataagttggttaaactctcaggcaaaacaaaccccatgaaccatcattatcatga |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32321001 |
ccctttgattcacatgcaatctccaacaacacttacttaaaagagataagttgattaaactctcaggcaaaacaaaccccatgaaccatcattatcatga |
32320902 |
T |
|
| Q |
196 |
tcaagacacattcaatcacacataatccgcaaatttttcaagctttctcactcccaccctataaaaaatatttagataaagattcaataaaagaaattat |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32320901 |
tcaagacacattcaatcacacataatccgcaaatttttcaagcttcctcactcccaccctataaaaaatatttaaataaagattcaataaaagaaattat |
32320802 |
T |
|
| Q |
296 |
atttgtatgagtcttgaagatggaaataaattaaaccggtaacaaaaacaagaaattttttcagaagaacccaactaccaccctaagaagtatttctact |
395 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
32320801 |
atttgtatgagccttgaagatggaaataaattaaaccggtaacaaaaacaataaattttttcaaaaaaacccaactaccaccctaagaagtatttctact |
32320702 |
T |
|
| Q |
396 |
cttacaccgtgataacttctttttgatacagtcaagcaaatggcagcaaaaccttaattgacgaagatttcctcctattagaaggccaagattgtaggtc |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32320701 |
cttacaccgtgataacttctttttgatacagtcaagcaaatggcagcaaaaccttaattgacgaagatttcctcctattagaaggccaagattgtaggtc |
32320602 |
T |
|
| Q |
496 |
ttctttgcttctctagcttatcttaggt---------tatcttatattcctatggtagttttagattgtaatattcccctttaatctatgattgattctc |
586 |
Q |
| |
|
||||||||||||||| |||||||||||| | |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32320601 |
ttctttgcttctctatcttatcttaggttttgagtgatgtcttatattcatatggtagttttagattgtaatattcccctctaatctatgattgattctc |
32320502 |
T |
|
| Q |
587 |
actttcataaacatattttgtatacataaattcttcgctaaaattcatatctcaaagcttannnnnnngtggaaattctttttggaatggtcttggggtc |
686 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||| |||||||| ||||| |
|
|
| T |
32320501 |
actttcataaatatattttgtatacataaactcttcgctaaaattcatatctaaaagcttatttttta-tggaaattctttttggtatggtctt-gggtc |
32320404 |
T |
|
| Q |
687 |
ttatggtgtctttttggaaaacttgaatcgattcaaaaggttataactgactctctaaaatcaattaactcaagtcaaaggagtttatagttaggtttaa |
786 |
Q |
| |
|
|||| |||||||| | | |||||||||||||||||||| || |||||||||||||| ||||||||| |||||||||||| ||||||||||||| |||| |
|
|
| T |
32320403 |
ttat-gtgtctttgt-gtaaacttgaatcgattcaaaa-gtcataactgactctct-aaatcaattcactcaagtcaaa-gagtttatagtta---ttaa |
32320312 |
T |
|
| Q |
787 |
atcgactcaaaattagatag-aaggtcatcgaatcgattcaaccttcatgggagttcatct-aatcgattcaatctttatctaaatt |
871 |
Q |
| |
|
|| ||||||||||||||||| ||| ||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32320311 |
attgactcaaaattagatagaaagaccatcgaatcgattcaaccttcat-gaagttcatctaaatcgattcaatctttatctaaatt |
32320226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 904 - 989
Target Start/End: Complemental strand, 32320150 - 32320065
Alignment:
| Q |
904 |
tttcttttggattaagatcatccacctataaatataccctttccttatttttcgcaataattgagatcattcgttaccattttctt |
989 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| | |||||||||||||| |||||||||| ||||||| |||| |||||||| |
|
|
| T |
32320150 |
tttcttttgcattaagatcatccacctataaatataacttttccttatttttcccaataattgaaatcattcattactattttctt |
32320065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 32321045 - 32320993
Alignment:
| Q |
8 |
aatgtcacaactcataattattttaattgtattgtattgttaacccctttgat |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32321045 |
aatgtcacaactcataattattttaattgtattgtattgataacccctttgat |
32320993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 542 - 645
Target Start/End: Original strand, 31244970 - 31245073
Alignment:
| Q |
542 |
tagttttagattgtaatattcccctttaatctatgattgattctcactttcataaacatattttgtatacataaattcttcgctaaaattcatatctcaa |
641 |
Q |
| |
|
||||||||||||||||| | ||||| || ||||| ||| |||||||||| ||||||||||||||| || |||||| | || | || |||||||| |||| |
|
|
| T |
31244970 |
tagttttagattgtaatgtgcccctctagtctataattaattctcacttgcataaacatattttgcatgcataaactatttgatagcattcatatttcaa |
31245069 |
T |
|
| Q |
642 |
agct |
645 |
Q |
| |
|
|||| |
|
|
| T |
31245070 |
agct |
31245073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 258 - 336
Target Start/End: Complemental strand, 14091573 - 14091495
Alignment:
| Q |
258 |
aaaaaatatttagataaagattcaataaaagaaattatatttgtatgagtcttgaagatggaaataaattaaaccggta |
336 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||||||||||| |||| | | |||||||| ||||| ||| |||||||||| |
|
|
| T |
14091573 |
aaaaaaaatttaaataaagattcaatggaagaaattatacctgtaagggccttgaagaaggaaagaaagtaaaccggta |
14091495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University