View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5088-Insertion-3 (Length: 951)

Name: NF5088-Insertion-3
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5088-Insertion-3
NF5088-Insertion-3
[»] chr2 (27 HSPs)
chr2 (7-653)||(2788887-2789533)
chr2 (733-951)||(2788649-2788868)
chr2 (515-715)||(41323809-41324011)
chr2 (515-633)||(7017839-7017957)
chr2 (518-616)||(36467228-36467326)
chr2 (515-775)||(37272910-37273182)
chr2 (517-619)||(16496797-16496899)
chr2 (515-781)||(38221614-38221893)
chr2 (676-757)||(30382965-30383046)
chr2 (515-653)||(11562726-11562862)
chr2 (540-735)||(17328597-17328804)
chr2 (518-633)||(35298440-35298555)
chr2 (676-735)||(38140471-38140530)
chr2 (576-653)||(35428748-35428825)
chr2 (522-618)||(3353132-3353228)
chr2 (676-759)||(7017698-7017780)
chr2 (565-620)||(18561116-18561171)
chr2 (515-582)||(40498676-40498743)
chr2 (515-653)||(42794774-42794913)
chr2 (659-737)||(40498468-40498546)
chr2 (517-562)||(5913034-5913079)
chr2 (564-633)||(21812975-21813044)
chr2 (676-736)||(21812242-21812302)
chr2 (680-758)||(36467075-36467152)
chr2 (681-759)||(42794921-42794999)
chr2 (447-495)||(8948393-8948442)
chr2 (662-715)||(32692600-32692653)
[»] chr4 (29 HSPs)
chr4 (516-657)||(10037865-10038006)
chr4 (515-734)||(53586301-53586523)
chr4 (515-735)||(45773902-45774131)
chr4 (526-641)||(35823599-35823714)
chr4 (658-759)||(47923103-47923204)
chr4 (515-641)||(4775787-4775912)
chr4 (664-737)||(4214094-4214167)
chr4 (515-654)||(44987248-44987388)
chr4 (676-763)||(2243037-2243124)
chr4 (523-646)||(28102017-28102139)
chr4 (515-620)||(35103514-35103619)
chr4 (684-743)||(35103696-35103755)
chr4 (658-725)||(19721863-19721930)
chr4 (679-737)||(10038042-10038100)
chr4 (541-618)||(21619576-21619654)
chr4 (680-738)||(23068088-23068146)
chr4 (658-759)||(2295240-2295341)
chr4 (539-653)||(27675422-27675538)
chr4 (564-633)||(45661842-45661911)
chr4 (676-737)||(53018739-53018800)
chr4 (518-574)||(24917588-24917644)
chr4 (676-716)||(25060561-25060601)
chr4 (683-758)||(15476927-15477002)
chr4 (531-653)||(40217542-40217665)
chr4 (515-653)||(53018565-53018704)
chr4 (607-657)||(24913831-24913881)
chr4 (607-657)||(24917516-24917566)
chr4 (676-735)||(40217448-40217509)
chr4 (680-737)||(47724770-47724827)
[»] chr1 (20 HSPs)
chr1 (519-715)||(16122697-16122907)
chr1 (515-774)||(50726513-50726774)
chr1 (515-633)||(13558486-13558604)
chr1 (515-759)||(14286884-14287141)
chr1 (550-635)||(30902397-30902485)
chr1 (676-788)||(38683096-38683207)
chr1 (676-747)||(40032524-40032595)
chr1 (515-657)||(270913-271054)
chr1 (558-632)||(781855-781929)
chr1 (661-758)||(10443401-10443497)
chr1 (659-736)||(25294715-25294792)
chr1 (517-653)||(38682924-38683061)
chr1 (659-775)||(31513775-31513891)
chr1 (521-616)||(4973086-4973181)
chr1 (676-757)||(4973256-4973337)
chr1 (680-733)||(50461390-50461443)
chr1 (558-653)||(13643799-13643894)
chr1 (682-737)||(17116135-17116190)
chr1 (676-759)||(40693795-40693878)
chr1 (518-646)||(11767649-11767778)
[»] chr5 (21 HSPs)
chr5 (517-642)||(16756079-16756204)
chr5 (659-775)||(7056953-7057068)
chr5 (676-759)||(19100207-19100290)
chr5 (515-652)||(13407261-13407398)
chr5 (515-636)||(32076537-32076658)
chr5 (515-633)||(26564959-26565077)
chr5 (515-657)||(41368586-41368727)
chr5 (503-646)||(3387271-3387414)
chr5 (515-646)||(5836500-5836631)
chr5 (515-735)||(29231078-29231311)
chr5 (515-583)||(31113999-31114067)
chr5 (676-759)||(34764764-34764847)
chr5 (515-633)||(2627963-2628081)
chr5 (545-653)||(31210891-31210999)
chr5 (515-646)||(34510832-34510964)
chr5 (679-734)||(31114174-31114229)
chr5 (663-716)||(14202899-14202952)
chr5 (680-759)||(39935481-39935561)
chr5 (691-737)||(3387168-3387214)
chr5 (683-725)||(13407441-13407483)
chr5 (563-636)||(28470233-28470306)
[»] chr3 (23 HSPs)
chr3 (515-657)||(52204126-52204268)
chr3 (518-734)||(40614723-40614940)
chr3 (517-620)||(20619278-20619381)
chr3 (517-658)||(29324059-29324201)
chr3 (676-756)||(46979527-46979607)
chr3 (515-653)||(27164029-27164166)
chr3 (515-657)||(38489727-38489870)
chr3 (515-737)||(36504720-36504942)
chr3 (691-758)||(51241443-51241510)
chr3 (683-737)||(7629376-7629430)
chr3 (515-633)||(45472603-45472721)
chr3 (517-653)||(20179036-20179169)
chr3 (691-743)||(35296316-35296368)
chr3 (539-657)||(20369272-20369389)
chr3 (679-737)||(29323960-29324018)
chr3 (515-618)||(32835255-32835360)
chr3 (517-611)||(52203963-52204057)
chr3 (529-657)||(52695578-52695706)
chr3 (686-773)||(34026887-34026974)
chr3 (680-757)||(24611640-24611717)
chr3 (675-760)||(36172111-36172196)
chr3 (680-733)||(43471668-43471721)
chr3 (685-737)||(52695746-52695799)
[»] chr8 (22 HSPs)
chr8 (514-646)||(11990736-11990868)
chr8 (515-759)||(25429887-25430144)
chr8 (517-620)||(18928564-18928667)
chr8 (515-633)||(24888769-24888887)
chr8 (517-620)||(6166451-6166554)
chr8 (676-759)||(24888943-24889026)
chr8 (683-781)||(11789555-11789653)
chr8 (515-657)||(12006694-12006835)
chr8 (680-737)||(11755846-11755903)
chr8 (564-617)||(26079454-26079507)
chr8 (681-737)||(9409819-9409875)
chr8 (515-619)||(18320728-18320831)
chr8 (517-636)||(31431395-31431515)
chr8 (515-574)||(11755706-11755765)
chr8 (539-758)||(13003232-13003459)
chr8 (515-653)||(32856002-32856140)
chr8 (676-737)||(6166322-6166382)
chr8 (680-737)||(17749077-17749134)
chr8 (518-653)||(9136732-9136867)
chr8 (676-710)||(18928735-18928769)
chr8 (678-716)||(30809046-30809084)
chr8 (515-616)||(11789374-11789475)
[»] chr7 (21 HSPs)
chr7 (659-758)||(34471627-34471726)
chr7 (515-759)||(45648224-45648481)
chr7 (518-645)||(22201092-22201218)
chr7 (518-645)||(22236603-22236729)
chr7 (659-747)||(2185895-2185983)
chr7 (515-619)||(3751496-3751600)
chr7 (515-759)||(47843767-47844024)
chr7 (676-716)||(22543534-22543574)
chr7 (516-620)||(43495755-43495859)
chr7 (680-736)||(5474777-5474833)
chr7 (515-583)||(25311005-25311073)
chr7 (676-743)||(25482789-25482856)
chr7 (515-653)||(40836371-40836510)
chr7 (515-657)||(48153010-48153153)
chr7 (540-621)||(45492178-45492259)
chr7 (515-619)||(42040457-42040561)
chr7 (681-737)||(42040637-42040693)
chr7 (680-759)||(31397369-31397448)
chr7 (676-759)||(43495927-43496010)
chr7 (555-653)||(34471744-34471842)
chr7 (658-735)||(45492047-45492124)
[»] chr6 (13 HSPs)
chr6 (515-709)||(32340277-32340482)
chr6 (515-653)||(8485926-8486063)
chr6 (515-646)||(688080-688212)
chr6 (517-583)||(2988131-2988197)
chr6 (676-788)||(2032531-2032643)
chr6 (515-583)||(30928367-30928435)
chr6 (515-657)||(10229424-10229567)
chr6 (681-759)||(688259-688337)
chr6 (515-620)||(2032356-2032462)
chr6 (676-734)||(2988302-2988360)
chr6 (517-642)||(12312026-12312152)
chr6 (515-600)||(12283722-12283807)
chr6 (522-633)||(6724483-6724595)
[»] scaffold0565 (1 HSPs)
scaffold0565 (539-781)||(7746-8001)
[»] scaffold0495 (1 HSPs)
scaffold0495 (515-657)||(6139-6282)


Alignment Details
Target: chr2 (Bit Score: 562; Significance: 0; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 7 - 653
Target Start/End: Complemental strand, 2789533 - 2788887
Alignment:
Q  7 agaacgcgagatcgttgttgttcttcgaatgtctctgaggcatttctgtgacaaatcggtgattttgcagaaagaggggttagggttttgaatcttcgaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2789533 agaacgcgagatcgttgttgttcttcgaatgtctctgaggcatttctgtgacaaatcggtgattttgcagaaagaggggttagggttttgaatcttcgaa 2789434  T
Q  107 gattttcgattttgattgatgattgatttgagttctaggtcttcgtggtaaaccgctacagaggatgacttggtttggtgtttatgggctttttatagct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2789433 gattttcgattttgattgatgattgatttgagttctaggtcttcgcggtaaaccgctacagaggatgacttggtttggtgtttatgggctttttacagct 2789334  T
Q  207 ataggtcatgcctctaaaataaatcaannnnnnngagttacttttcccaccctatgattcaatatattttaacgtgttttggaagattttattgggtgtt 306  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2789333 ataggtcatgcctctaaaataaatcaatttttttgagttacttttcccaccctatgattcaatatattttaacgtgttttggaagattttattggatgtt 2789234  T
Q  307 gtttatgccgttcaaattttataatctaaattgcgttaagtgttcgagaaacccaatagagttgaaaaagaaggtgccttaattttaatgacaaagttag 406  Q
    ||||||| | ||||||||||||||||||||||| ||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  2789233 gtttatgtctttcaaattttataatctaaattgtgttaagtgtgcgagaaactcaatagagttaaaaaagaaggtgccttaattttaatgacaaagttag 2789134  T
Q  407 tatctatgaaattcggatatgtgatacatgggcgagtacaatacgatacgggtatacggatatgcaaaattttataatttaggatatgaaattgaatcat 506  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2789133 tatctatgaagttcggatatgtgatacatgagcgagtacaatacgatacggatatacggatatgcaaaattttataatttaggatatgaaattgaatcat 2789034  T
Q  507 atacatggagtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatatt 606  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  2789033 atacatggagtataattttaaatggtttttccagaaacaattttactaatgcatatttaaaattgaatgatatacatttccattaaactttcacaatatt 2788934  T
Q  607 gtctcacttttttaacattcatcttttctatgatacgtatgtgtgaa 653  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  2788933 gtctcacttttttaacattcatcttttctatgatatgtatgtgtgaa 2788887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 733 - 951
Target Start/End: Complemental strand, 2788868 - 2788649
Alignment:
Q  733 ttcgtaagtacatattcgcgagtatccatataatatcggtatctaatacatattcgtgtttaaagtatgtaaacatcatagtatattaagtgtgtgttat 832  Q
    ||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2788868 ttcgtaagtacgtattcgcgagtatccatagagtatcggtatctaatacatattcgtgtttaaagtatgtgaacatcatagtatattaagtgtgtgttat 2788769  T
Q  833 ttactttcgtaagtacttaaattgtatttataagacaacatttcgttttataaattcattcaataatgttc-tcaggacctagatctggatgcattatat 931  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  2788768 ttactttcgtaagtacttaaattgtatttataagacaacatttcgttttataaattcattcaataatgttcttaaggacctagatctggatgcattatat 2788669  T
Q  932 gatgtcattgtatatatgcc 951  Q
    ||||||||||||||||||||    
T  2788668 gatgtcattgtatatatgcc 2788649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 515 - 715
Target Start/End: Complemental strand, 41324011 - 41323809
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    |||||||||||||  |||| ||| ||||||||||||||| |||||||| ||||||||||| |||||||| || | |||| ||| |||| |||||||||||    
T  41324011 agtataattttaagcggttcatcgagaaacaattttactgatgcatatctaaaattgaatcatatacatctctactgaatttttacaacattgtctcact 41323912  T
Q  615 tttttaacattcatc-ttttctatgatacgtatgtgtgaaatat-attgtgtatctatgaaacatcatataagtatccgataaaatattttttaaaaatt 712  Q
    |||||| | |||||| ||||||| ||||| ||| |||||| |||  || |||||||    |  ||||||||||||||||||||||| |||||| ||| ||    
T  41323911 tttttaccgttcatctttttctaggatacatatatgtgaagtatccttatgtatctgcagagtatcatataagtatccgataaaatgtttttttaaattt 41323812  T
Q  713 aaa 715  Q
    |||    
T  41323811 aaa 41323809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 515 - 633
Target Start/End: Complemental strand, 7017957 - 7017839
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| ||||||||| |||||||||| |||  |||||||| ||||||||||| |||||||| || | |||| ||| |||| |||||||||||    
T  7017957 agtataattttaagtggtttatcgagaaacaattctacccatgcatatctaaaattgaatcatatacatctctactgaatttttacaacattgtctcact 7017858  T
Q  615 tttttaacattcatctttt 633  Q
    |||||| | ||||||||||    
T  7017857 tttttacccttcatctttt 7017839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 518 - 616
Target Start/End: Complemental strand, 36467326 - 36467228
Alignment:
Q  518 ataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttt 616  Q
    |||||||||| ||||| ||| ||||||||||||||| |||||||| ||||||||||| ||||||||||| | |||| ||| |||| |||||||||||||    
T  36467326 ataattttaagtggttcatcgagaaacaattttacttatgcatatctaaaattgaatcatatacatttcaactgaatttttacaacattgtctcacttt 36467228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 515 - 775
Target Start/End: Original strand, 37272910 - 37273182
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| ||||| ||| | ||||||||||| | |||||| | ||||||||||| |||||||| || | |||| ||| |||| ||||||| |||    
T  37272910 agtataattttaagtggttcatcgaaaaacaattttattgatgcatgtctaaaattgaatcatatacatctctactgaatttttacaacattgtcttact 37273009  T
Q  615 tttttaacattcatcttt-tctatgatacgtatgtgtgaaatat------------attgtgtatctatgaaacatcatataagtatccgataaaatatt 701  Q
    |||||| | ||||||||| | ||   ||| ||| ||||||||||            ||||||||||| |  ||||||||||||||| || |||||||||     
T  37273010 tttttacctttcatctttgtttagattacatatatgtgaaatatcttacaagtatcattgtgtatctgtagaacatcatataagtaaccaataaaatata 37273109  T
Q  702 ttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatccatat--aatatcggtatc 775  Q
    |||| |||||||||   || |||||||||||||||||  |||||||  || ||||||| |||  ||||||||||||    
T  37273110 tttttaaaattaaa---ataaattttgatacttcgtagatacatatctgcaagtatccgtattgaatatcggtatc 37273182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 517 - 619
Target Start/End: Original strand, 16496797 - 16496899
Alignment:
Q  517 tataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttt 616  Q
    |||| |||||| ||||| ||| ||||||||||||||| || || || ||||||||||| |||||||| | ||||||| |||||||| |||||| ||||||    
T  16496797 tatacttttaagtggttcatcgagaaacaattttactgattcacatctaaaattgaatcatatacatcttcattgaattttcacaacattgtcccacttt 16496896  T
Q  617 ttt 619  Q
    |||    
T  16496897 ttt 16496899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 515 - 781
Target Start/End: Original strand, 38221614 - 38221893
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| || || ||| |||||||||| || | ||||||||  |||||||||| |||||||| || ||||||  || |||| |||||||||||    
T  38221614 agtataattttaagtgattcatcaagaaacaattctagtgatgcatatccaaaattgaatcatatacatctctattgaatgtttacaacattgtctcact 38221713  T
Q  615 tttttaacattcatc-ttttctatgatacgtatgtgtgaaatat------------attgtgtatctatgaaacatcatataagtatccgataaaatatt 701  Q
     |||||   |||||| ||||||| ||||| ||| |||||| |||             ||||||||||  |||  ||| ||||||||| || |||||||||    
T  38221714 cttttactcttcatctttttctaggatacatatatgtgaagtatcttgtaaatatccttgtgtatctgcgaagtatcgtataagtattcgttaaaatatt 38221813  T
Q  702 ttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatccatataatatcggtatctaatac 781  Q
    ||||||||||| |||  |||||||  ||||||||||  || | ||| ||||||||||| |  | |||||||||| |||||    
T  38221814 ttttaaaaatttaaataattaattccgatacttcgtgggtgcgtatccgcgagtatccgtggagtatcggtatccaatac 38221893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 676 - 757
Target Start/End: Original strand, 30382965 - 30383046
Alignment:
Q  676 atcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtat 757  Q
    |||||||| ||||||||||||||||||||||||||||||||  ||||| |  ||||||||||  |||| ||| |||||||||    
T  30382965 atcatatatgtatccgataaaatattttttaaaaattaaaataattaactccgatacttcgtgggtacgtatccgcgagtat 30383046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 515 - 653
Target Start/End: Original strand, 11562726 - 11562862
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| ||||||||| |||||||||| |  | || |||||  |||||||||| ||||| || || | |||| ||  |||| |||||||||||    
T  11562726 agtataattttaagtggtttatcgagaaacaattgt--tgattcatatccaaaattgaatcatatatatctctactgaatttctacaacattgtctcact 11562823  T
Q  615 tttttaacattcatcttttctatgatacgtatgtgtgaa 653  Q
    |||||| | ||||||||||||   |||||||| ||||||    
T  11562824 tttttacccttcatcttttctcgaatacgtatttgtgaa 11562862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 540 - 735
Target Start/End: Complemental strand, 17328804 - 17328597
Alignment:
Q  540 gaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttttttaacattcatcttttc-tatg 638  Q
    |||||||||  |||||||||||| ||||||||||| |||||||| ||   |||| ||| ||||  ||||||||||||| ||   ||||||||||| || |    
T  17328804 gaaacaattcgactaatgcatatctaaaattgaatcatatacatctctcctgaatttttacaaccttgtctcacttttctacgcttcatcttttcctagg 17328705  T
Q  639 atacgtatgtgtgaaatat------------attgtgtatctatgaaacatcatataagtatccgataaaatattttttaaaaattaaaacgattaattt 726  Q
    |||| ||| |||||| |||            |||||||||||||| |  |||||||||||||||||||| |||||||||  ||||| |||  ||||||||    
T  17328704 atacatatatgtgaagtatcttataagtatcattgtgtatctatggagtatcatataagtatccgataatatattttttttaaatt-aaataattaattt 17328606  T
Q  727 tgatacttc 735  Q
    |||||||||    
T  17328605 tgatacttc 17328597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 518 - 633
Target Start/End: Complemental strand, 35298555 - 35298440
Alignment:
Q  518 ataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcactttt 617  Q
    |||||||||| ||||| ||| ||||| |||| || | |||||| | ||||||||||| |||||||| || | |||| ||| |||| ||||||||||||||    
T  35298555 ataattttaagtggttcatcgagaaataattctattgatgcatttctaaaattgaattatatacatctctactgaatttttacaacattgtctcactttt 35298456  T
Q  618 ttaacattcatctttt 633  Q
    ||| | || |||||||    
T  35298455 ttaccttttatctttt 35298440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 676 - 735
Target Start/End: Complemental strand, 38140530 - 38140471
Alignment:
Q  676 atcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttc 735  Q
    |||| |||| ||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  38140530 atcacataaatatccgataaaatatttattaaaaattaaaataattaattttgatacttc 38140471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 576 - 653
Target Start/End: Complemental strand, 35428825 - 35428748
Alignment:
Q  576 atatacatttccattgaactttcacaatattgtctcacttttttaacattcatcttttctatgatacgtatgtgtgaa 653  Q
    |||||||| |||| |||| ||||| |  ||||||||||||||||| | |||||||||| || ||||||||||||||||    
T  35428825 atatacatctccactgaattttcagatcattgtctcacttttttacccttcatcttttgtaagatacgtatgtgtgaa 35428748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 522 - 618
Target Start/End: Complemental strand, 3353228 - 3353132
Alignment:
Q  522 ttttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttttt 618  Q
    |||||| ||||| ||| | |||||||| || | || ||||| | ||||||||| ||||||||||||||| || |||||||| || ||||||||||||    
T  3353228 ttttaactggttaatcgaaaaacaattataatgattcatatcttaaattgaatcatatacatttccattaaattttcacaacatagtctcacttttt 3353132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 676 - 759
Target Start/End: Complemental strand, 7017780 - 7017698
Alignment:
Q  676 atcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatcc 759  Q
    |||||||||||||||||||||||||||||| |||||| |||  |||||||  |||| |||||  |||| ||| |||||||||||    
T  7017780 atcatataagtatccgataaaatatttttttaaaatttaaataattaattccgata-ttcgtgggtacgtatccgcgagtatcc 7017698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 565 - 620
Target Start/End: Complemental strand, 18561171 - 18561116
Alignment:
Q  565 aaaattgaataatatacatttccattgaactttcacaatattgtctcactttttta 620  Q
    |||||||||| ||||||||||||| |||| ||||| || |||||||||||||||||    
T  18561171 aaaattgaatcatatacatttccactgaattttcaaaacattgtctcactttttta 18561116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 515 - 582
Target Start/End: Complemental strand, 40498743 - 40498676
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatataca 582  Q
    ||||||||||||| ||||| ||| |||||||||| || | |||||||| ||||||||||| |||||||    
T  40498743 agtataattttaagtggttcatcgagaaacaattctagtgatgcatatctaaaattgaatcatataca 40498676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 515 - 653
Target Start/End: Original strand, 42794774 - 42794913
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| || || ||| |||||||||| || | |||||||| ||||||||| | | |||||| |  | |||| ||| |||| |||||||||||    
T  42794774 agtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcacatacatctataatgaatttttacaacattgtctcact 42794873  T
Q  615 tttttaacattcatc-ttttctatgatacgtatgtgtgaa 653  Q
    ||||||   |||||| ||||||| ||||||| | ||||||    
T  42794874 tttttactcttcatctttttctaggatacgtgtttgtgaa 42794913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 659 - 737
Target Start/End: Complemental strand, 40498546 - 40498468
Alignment:
Q  659 ttgtgtatctatgaaacatcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgt 737  Q
    ||||||||||| | |  ||| |||||||||||| |||||||||||||||||||| |||  ||||| || ||||||||||    
T  40498546 ttgtgtatctacggagtatcttataagtatccgttaaaatattttttaaaaatttaaataattaagttcgatacttcgt 40498468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 517 - 562
Target Start/End: Complemental strand, 5913079 - 5913034
Alignment:
Q  517 tataattttaaatggtttatccagaaacaattttactaatgcatat 562  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||||||    
T  5913079 tataattttaagtggtttatcaagaaacaattttattaatgcatat 5913034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 564 - 633
Target Start/End: Complemental strand, 21813044 - 21812975
Alignment:
Q  564 taaaattgaataatatacatttccattgaactttcacaatattgtctcacttttttaacattcatctttt 633  Q
    ||||||||||| |||| ||||||||||||| ||  |||| |||||||||||||||||   ||||||||||    
T  21813044 taaaattgaatcatattcatttccattgaatttatacaacattgtctcacttttttactcttcatctttt 21812975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 676 - 736
Target Start/End: Complemental strand, 21812302 - 21812242
Alignment:
Q  676 atcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcg 736  Q
    ||||||||||||||| || |||||| |||| ||||||||||  ||||||| ||||||||||    
T  21812302 atcatataagtatcccatcaaatatatttttaaaattaaaataattaattctgatacttcg 21812242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 680 - 758
Target Start/End: Complemental strand, 36467152 - 36467075
Alignment:
Q  680 tataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatc 758  Q
    |||||||||| |||||||||||||||  |||||||||  |||||||  |||||||||| ||||| ||||| | ||||||    
T  36467152 tataagtatcagataaaatatttttt-taaattaaaataattaattccgatacttcgtgagtacgtattcacaagtatc 36467075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 681 - 759
Target Start/End: Original strand, 42794921 - 42794999
Alignment:
Q  681 ataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatcc 759  Q
    |||||||||||||||||| ||| |||||||||||||  || |||| ||||||||| |   ||| ||| |||||||||||    
T  42794921 ataagtatccgataaaatgtttattaaaaattaaaataatcaattctgatacttcatggatacgtatccgcgagtatcc 42794999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 447 - 495
Target Start/End: Complemental strand, 8948442 - 8948393
Alignment:
Q  447 atacgatacgggtatacggatatgc-aaaattttataatttaggatatga 495  Q
    |||||||||||||||  |||||||| ||||||||| ||||||||||||||    
T  8948442 atacgatacgggtatgaggatatgcaaaaattttaaaatttaggatatga 8948393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 662 - 715
Target Start/End: Complemental strand, 32692653 - 32692600
Alignment:
Q  662 tgtatctatgaaacatcatataagtatccgataaaatattttttaaaaattaaa 715  Q
    |||||| |||||| ||  ||||||||||| ||||||||||||| ||||||||||    
T  32692653 tgtatccatgaaatattttataagtatcctataaaatatttttgaaaaattaaa 32692600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 5e-31; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 516 - 657
Target Start/End: Original strand, 10037865 - 10038006
Alignment:
Q  516 gtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcactt 615  Q
    |||| ||||||| ||||| ||| |||||||| | |||| |||||||| ||||||||||| |||||||| ||||||||| |||| ||| ||||||||||||    
T  10037865 gtattattttaagtggttcatcgagaaacaaatctactgatgcatatctaaaattgaatcatatacatctccattgaattttcgcaacattgtctcactt 10037964  T
Q  616 ttttaacattcatcttttctatgatacgtatgtgtgaaatat 657  Q
    ||||| | ||||||||||||| ||||| ||| ||||||||||    
T  10037965 ttttacccttcatcttttctaggatacatatatgtgaaatat 10038006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 515 - 734
Target Start/End: Complemental strand, 53586523 - 53586301
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| | ||| ||| |||||||||| || | |||||||| | ||||||||| |||||||| || ||||||  || |||| |||||||||||    
T  53586523 agtataattttaagtagttcatcgagaaacaattatagtgatgcatatctgaaattgaatcatatacatctctattgaatgtttacaacattgtctcact 53586424  T
Q  615 tttttaacattcatc-ttttctatgatacgtatgtgtgaaatatattgt--gtatctatgaaacatcatataagtatccgataaaatattttttaaaaat 711  Q
     ||||| | |||||| ||||||| ||||||||| |||||| ||| || |  |||||| || |  ||| ||||| |||||| |||||||||||| ||||||    
T  53586423 attttacccttcatctttttctaggatacgtatctgtgaagtatcttataagtatctgtggagtatcgtataattatccgttaaaatatttttaaaaaat 53586324  T
Q  712 taaaacgattaattttgatactt 734  Q
    | |||  ||||||| ||||||||    
T  53586323 ttaaataattaattatgatactt 53586301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 515 - 735
Target Start/End: Complemental strand, 45774131 - 45773902
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| ||||| ||| |||||||||| || | ||| |||| ||||||||||| |||||||| |  | |||| ||| |||| |||||||||||    
T  45774131 agtataattttaagtggttcatcgagaaacaattctattgatgtatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcact 45774032  T
Q  615 tttttaacattcatc-ttttctatgatacgtatgtgtgaaatatatt--------gtgtatctatgaaacatcatataagtatccgataaaatatttttt 705  Q
    ||||||   |||||| ||||||| ||||||||| |||||| ||| ||          |||||| || |  |||| |||||||||||||||||||||| ||    
T  45774031 tttttattcttcatctttttctaggatacgtatctgtgaagtatcttaaaattagaggtatctttggagtatcacataagtatccgataaaatatttatt 45773932  T
Q  706 aaaaattaaaacgattaattttgatacttc 735  Q
    |||||||||||  |||||||| ||||||||    
T  45773931 aaaaattaaaataattaatttcgatacttc 45773902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 526 - 641
Target Start/End: Original strand, 35823599 - 35823714
Alignment:
Q  526 aaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttttttaacatt 625  Q
    |||||||||||| |||||||||| ||||||| ||||| ||||||||||| ||||||||||||| |    |||||||| ||||||||||||| ||| | ||    
T  35823599 aaatggtttatcgagaaacaattctactaattcatatctaaaattgaattatatacatttccaatattttttcacaacattgtctcactttcttaccctt 35823698  T
Q  626 catcttttctatgata 641  Q
    ||||||||||| ||||    
T  35823699 catcttttctacgata 35823714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 658 - 759
Target Start/End: Original strand, 47923103 - 47923204
Alignment:
Q  658 attgtgtatctatgaaacatcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtat 757  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||  ||||||| ||||||| |||  |||| |||  ||||||||    
T  47923103 attgtgtatctgtgaaatatcatataagtatccgataaaatatttttttaaaattaaaataattaattatgatactccgtgggtacgtatctgcgagtat 47923202  T
Q  758 cc 759  Q
    ||    
T  47923203 cc 47923204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 515 - 641
Target Start/End: Complemental strand, 4775912 - 4775787
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| ||| ||||| ||||||||||    | |||||||| ||||||||| | ||||||||||||| | || | |||||| |||||||||||    
T  4775912 agtataattttaagtggattatcgagaaacaattactttgatgcatatctaaaattga-tcatatacatttccactaaattatcacaacattgtctcact 4775814  T
Q  615 tttttaacattcatcttttctatgata 641  Q
    |||||| | ||||||||||||| ||||    
T  4775813 tttttacccttcatcttttctaggata 4775787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 664 - 737
Target Start/End: Original strand, 4214094 - 4214167
Alignment:
Q  664 tatctatgaaacatcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgt 737  Q
    ||||||||||  |||||||||||||| ||||||||||||||||||||||||||  ||||||| || ||||||||    
T  4214094 tatctatgaagtatcatataagtatcagataaaatattttttaaaaattaaaataattaattctggtacttcgt 4214167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 515 - 654
Target Start/End: Complemental strand, 44987388 - 44987248
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| | ||| ||  |||||||||| |||  |||||||| ||||||||||| || ||||| || | |||| ||| |||| ||| |||||||    
T  44987388 agtataattttaagtagttcattgagaaacaattctaccgatgcatatctaaaattgaatcatgtacatctcgagtgaatttttacaacattatctcact 44987289  T
Q  615 t-ttttaacattcatcttttctatgatacgtatgtgtgaaa 654  Q
    | ||||| | ||||||||||||| ||||||||| |||||||    
T  44987288 ttttttacctttcatcttttctaggatacgtatttgtgaaa 44987248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 676 - 763
Target Start/End: Original strand, 2243037 - 2243124
Alignment:
Q  676 atcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatccatat 763  Q
    |||| |||||||| ||||||||||||| |||||||||||||  ||||||| ||||||||| |  |||| ||||||||||||| |||||    
T  2243037 atcacataagtattcgataaaatatttattaaaaattaaaataattaattctgatacttcatgggtacgtattcgcgagtattcatat 2243124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 523 - 646
Target Start/End: Original strand, 28102017 - 28102139
Alignment:
Q  523 tttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttttttaac 622  Q
    ||||| ||||| ||| ||||||||||||||| || ||||| |||||||||||||||||||| || | |||| ||||| || || |||||| ||||||| |    
T  28102017 tttaagtggttcatcgagaaacaattttacttattcatatataaaattgaataatatacatctcaactgaattttcataacatcgtctca-ttttttacc 28102115  T
Q  623 attcatcttttctatgatacgtat 646  Q
     |||||||||| || | |||||||    
T  28102116 cttcatcttttataagttacgtat 28102139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 515 - 620
Target Start/End: Original strand, 35103514 - 35103619
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| || || |||| ||| ||||| || | |||||||| ||||||||||| ||||||||||  | |||| ||| |||| |||||||||||    
T  35103514 agtataattttaagtgtttcatccggaatcaattataatgatgcatatctaaaattgaatcatatacatttataatgaatttttacaacattgtctcact 35103613  T
Q  615 ttttta 620  Q
    ||||||    
T  35103614 ttttta 35103619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 684 - 743
Target Start/End: Original strand, 35103696 - 35103755
Alignment:
Q  684 agtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtac 743  Q
    |||||| |||||||||||| |||||||||||||  ||||||||||||||||||| |||||    
T  35103696 agtatctgataaaatatttgttaaaaattaaaataattaattttgatacttcgtgagtac 35103755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 658 - 725
Target Start/End: Original strand, 19721863 - 19721930
Alignment:
Q  658 attgtgtatctatgaaacatcatataagtatccgataaaatattttttaaaaattaaaacgattaatt 725  Q
    ||||||||||| || |  |||| |||||||||||||||||||||| |||||||||||||  |||||||    
T  19721863 attgtgtatctgtggagtatcacataagtatccgataaaatatttattaaaaattaaaataattaatt 19721930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 679 - 737
Target Start/End: Original strand, 10038042 - 10038100
Alignment:
Q  679 atataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgt 737  Q
    ||||||||||||||||||||||||||||| || |||||  ||||||||| ||| |||||    
T  10038042 atataagtatccgataaaatattttttaataactaaaataattaattttaatatttcgt 10038100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 541 - 618
Target Start/End: Complemental strand, 21619654 - 21619576
Alignment:
Q  541 aaacaattttactaatgcatat-ttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttttt 618  Q
    |||||||| |||| || ||||| |||||||||||| |||||||| | ||||||| ||||||||  ||||||||||||||    
T  21619654 aaacaattatactcattcatatcttaaaattgaatcatatacatcttcattgaattttcacaaagttgtctcacttttt 21619576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 680 - 738
Target Start/End: Original strand, 23068088 - 23068146
Alignment:
Q  680 tataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgta 738  Q
    ||||| |||||||||| ||||||||||||||||||||  |||||||| || ||||||||    
T  23068088 tataaatatccgataatatattttttaaaaattaaaataattaatttcgaaacttcgta 23068146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 658 - 759
Target Start/End: Complemental strand, 2295341 - 2295240
Alignment:
Q  658 attgtgtatctatgaaacatcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtat 757  Q
    ||||||||||| || || |||  |||| |||| |||||||||||| |||||||||||||  |||||||  ||||||||||   ||| ||| |||||||||    
T  2295341 attgtgtatctgtggaatatcccataaatatctgataaaatatttattaaaaattaaaataattaattccgatacttcgtggatacgtatccgcgagtat 2295242  T
Q  758 cc 759  Q
    ||    
T  2295241 cc 2295240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 539 - 653
Target Start/End: Complemental strand, 27675538 - 27675422
Alignment:
Q  539 agaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttttttaacattca--tcttttcta 636  Q
    |||||||||| || | |||||||| ||||||||||| |||||||| ||   ||||  ||||||| ||||||||||| ||||| | ||||  | |||||||    
T  27675538 agaaacaattctattgatgcatatctaaaattgaatcatatacatctctgctgaatcttcacaacattgtctcactattttacccttcattttttttcta 27675439  T
Q  637 tgatacgtatgtgtgaa 653  Q
     ||||||||| ||||||    
T  27675438 ggatacgtatatgtgaa 27675422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 564 - 633
Target Start/End: Complemental strand, 45661911 - 45661842
Alignment:
Q  564 taaaattgaataatatacatttccattgaactttcacaatattgtctcacttttttaacattcatctttt 633  Q
    ||||||||||| |||||| || ||| |||| |||||||| |||||||||||||||||   ||||||||||    
T  45661911 taaaattgaatcatatacgttcccactgaattttcacaacattgtctcacttttttactcttcatctttt 45661842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 737
Target Start/End: Original strand, 53018739 - 53018800
Alignment:
Q  676 atcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgt 737  Q
    |||| |||||||||||||| ||||||| |||||||||||||  | ||||||| |||||||||    
T  53018739 atcaaataagtatccgatataatatttattaaaaattaaaataactaattttaatacttcgt 53018800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 518 - 574
Target Start/End: Complemental strand, 24917644 - 24917588
Alignment:
Q  518 ataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaat 574  Q
    |||||||||| ||||| ||| |||||||||| |||||||| |||| |||||||||||    
T  24917644 ataattttaagtggttcatcgagaaacaattctactaatgtatatctaaaattgaat 24917588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 676 - 716
Target Start/End: Original strand, 25060561 - 25060601
Alignment:
Q  676 atcatataagtatccgataaaatattttttaaaaattaaaa 716  Q
    ||||||||| ||| |||||||||||||||||||||||||||    
T  25060561 atcatataattattcgataaaatattttttaaaaattaaaa 25060601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 683 - 758
Target Start/End: Original strand, 15476927 - 15477002
Alignment:
Q  683 aagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatc 758  Q
    ||||||| ||||||| |||| |||||||||||||   ||||||  |||||||||| ||||| ||| ||||||||||    
T  15476927 aagtatctgataaaacatttattaaaaattaaaatagttaattccgatacttcgtcagtacgtatccgcgagtatc 15477002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 653
Target Start/End: Complemental strand, 40217665 - 40217542
Alignment:
Q  531 gtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttttttaacattcatc- 629  Q
    ||||||| |||||||||| |||  | |||||  ||||||||||| |||||||| |  | |||| ||| | || ||||||||||||||||| | ||||||     
T  40217665 gtttatcaagaaacaattctaccgacgcatacataaaattgaatcatatacatctttactgaatttttataacattgtctcacttttttacccttcatct 40217566  T
Q  630 ttttctatgatacgtatgtgtgaa 653  Q
    ||||||| |||| |||| ||||||    
T  40217565 ttttctaggatatgtatatgtgaa 40217542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 653
Target Start/End: Original strand, 53018565 - 53018704
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| || || ||  |||||||||| || | |||||||| ||||||||||| |||||||  |  | |||| ||| | || ||||||||| |    
T  53018565 agtataattttaactgattcattgagaaacaattctattgatgcatatctaaaattgaatcatatacagctagaatgaatttttaaaagattgtctcatt 53018664  T
Q  615 tttttaacattcatc-ttttctatgatacgtatgtgtgaa 653  Q
    ||||||   |||||| ||||||| ||||||||| ||||||    
T  53018665 tttttactcttcatctttttctaggatacgtatatgtgaa 53018704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 607 - 657
Target Start/End: Complemental strand, 24913881 - 24913831
Alignment:
Q  607 gtctcacttttttaacattcatcttttctatgatacgtatgtgtgaaatat 657  Q
    |||||||||||||  | ||||||||||||| ||||||||| ||||||||||    
T  24913881 gtctcacttttttccccttcatcttttctaggatacgtatctgtgaaatat 24913831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 607 - 657
Target Start/End: Complemental strand, 24917566 - 24917516
Alignment:
Q  607 gtctcacttttttaacattcatcttttctatgatacgtatgtgtgaaatat 657  Q
    |||||||||||||  | ||||||||||||| ||||||||| ||||||||||    
T  24917566 gtctcacttttttccccttcatcttttctaggatacgtatctgtgaaatat 24917516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 735
Target Start/End: Complemental strand, 40217509 - 40217448
Alignment:
Q  676 atcatataagtatccgat-aaaata-ttttttaaaaattaaaacgattaattttgatacttc 735  Q
    |||||||||||||||||| |||||| ||||||||||||| |||  ||||||| |||||||||    
T  40217509 atcatataagtatccgataaaaatatttttttaaaaatttaaataattaattctgatacttc 40217448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 737
Target Start/End: Original strand, 47724770 - 47724827
Alignment:
Q  680 tataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgt 737  Q
    ||||||||||||||||||||| | ||  |||||||||  ||||||| |||||||||||    
T  47724770 tataagtatccgataaaatatatattttaaattaaaataattaattctgatacttcgt 47724827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 4e-28; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 519 - 715
Target Start/End: Complemental strand, 16122907 - 16122697
Alignment:
Q  519 taattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttttt 618  Q
    |||||| || ||||| ||| |||||||||| |||| |||||||| ||||||||||| ||||||||||||| |||| |||||||| |||||||||||||||    
T  16122907 taatttgaagtggttcatcaagaaacaattatactgatgcatatctaaaattgaatcatatacatttccaatgaa-tttcacaacattgtctcacttttt 16122809  T
Q  619 taacattcatctttt---ctatgatacgtatgtgtgaaata------------tattgtgtatctatgaaacatcatataagtatccgataaaatatttt 703  Q
    || | ||||| ||||   ||||||||||||| |||||| ||            |||  ||||||||||||| ||| |||||||||||| |||||||||||    
T  16122808 tacccttcattttttgtcctatgatacgtatatgtgaagtatcttataagtattatgatgtatctatgaaatatcttataagtatccggtaaaatatttt 16122709  T
Q  704 ttaaaaattaaa 715  Q
    ||| ||||||||    
T  16122708 ttagaaattaaa 16122697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 515 - 774
Target Start/End: Complemental strand, 50726774 - 50726513
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    |||||||||||||  | || ||| |||||||||| || | | |||||| ||||||||| | |||||||| |  | |||| ||| |||| |||||||||||    
T  50726774 agtataattttaagcgtttcatcgagaaacaattctattgacgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgtctcact 50726675  T
Q  615 tttttaacattcatctttt-ctatgatacgtatgtgtgaaatata-ttgtgtatctatgaaacatcatataagtatccgataaaatattttttaaaaatt 712  Q
    ||||||   ||| |||||| |||| |||||| | |||||| |||  |||||||||| ||||  |||| |||||||||||| ||||||||| |||||||||    
T  50726674 tttttactcttcttctttttctataatacgtgtctgtgaagtatccttgtgtatctgtgaagtatcacataagtatccgaaaaaatatttattaaaaatt 50726575  T
Q  713 aaaacgattaattttgatacttcgtaagtacatattcgcgagtatccatataatatcggtat 774  Q
    ||||  |||||||  ||||||||||   ||| ||||| ||| ||||| |  |||||||||||    
T  50726574 aaaataattaattccgatacttcgtggatacgtattcacgaatatccgtggaatatcggtat 50726513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 515 - 633
Target Start/End: Complemental strand, 13558604 - 13558486
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| ||||| ||| ||||||||||||| | |||||||| ||||||||||| ||||||||  | ||||||  || |||| |||||||||||    
T  13558604 agtataattttaagtggttcatcgagaaacaattttagtgatgcatatctaaaattgaatcatatacatccctattgaatgtttacaacattgtctcact 13558505  T
Q  615 tttttaacattcatctttt 633  Q
    ||||||   ||||||||||    
T  13558504 tttttactcttcatctttt 13558486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 515 - 759
Target Start/End: Complemental strand, 14287141 - 14286884
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| ||||| | |  ||||||||| ||||||||||||| |||||||| || |||||||| ||   |||| ||| |||| |||||||||||    
T  14287141 agtataattttaagtggttcaccgtgaaacaattctactaatgcatatctaaaattgcatcatatacatctctcctgaatttttacaacattgtctcact 14287042  T
Q  615 tttttaacattcatc-ttttctatgatacgtatgtgtgaaatat------------attgtgtatctatgaaacatcatataagtatccgataaaatatt 701  Q
    |||||  | |||||| ||||||| ||||| ||| || ||| |||            |||||||||||||| |  |||||||||||||||||||| ||||     
T  14287041 ttttttcccttcatctttttctaggatacatatatgcgaagtatcttataagtatcattgtgtatctatggagtatcatataagtatccgataatatata 14286942  T
Q  702 ttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatcc 759  Q
    ||||  |||||||||  |||||||  |||||||| | ||||  ||| |||||||||||    
T  14286941 ttttttaaattaaaataattaattccgatacttcatgagtatgtatccgcgagtatcc 14286884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 550 - 635
Target Start/End: Original strand, 30902397 - 30902485
Alignment:
Q  550 tactaatgcatatttaaaattgaataatatacatttccattgaactttcacaa---tattgtctcacttttttaaca-ttcatcttttct 635  Q
    |||| |||||||||||||||||||| |||||||| ||||||||| ||||||||   ||||||||||| ||||||||| ||||||||||||    
T  30902397 tactgatgcatatttaaaattgaatcatatacatctccattgaattttcacaaaattattgtctcac-tttttaacagttcatcttttct 30902485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 676 - 788
Target Start/End: Original strand, 38683096 - 38683207
Alignment:
Q  676 atcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatccatataatatcggtatc 775  Q
    |||| |||| |||| ||||||||||||||||||||||||||  |||||||| |||||||| |  |||| |||| |||||||||| || | ||||||| ||    
T  38683096 atcacataaatatctgataaaatattttttaaaaattaaaataattaatttcgatacttcat-ggtacgtatttgcgagtatccgtagagtatcggtgtc 38683194  T
Q  776 taatacatattcg 788  Q
      |||||||||||    
T  38683195 cgatacatattcg 38683207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 676 - 747
Target Start/End: Complemental strand, 40032595 - 40032524
Alignment:
Q  676 atcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatat 747  Q
    |||||||||||||| ||||||||||||||||||||||||||  || ||||  ||||||||||  ||||||||    
T  40032595 atcatataagtatctgataaaatattttttaaaaattaaaataataaattccgatacttcgtgggtacatat 40032524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 515 - 657
Target Start/End: Complemental strand, 271054 - 270913
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| || || ||  ||||| |||| |||| ||| |||| ||||||||||| ||||| || ||||| ||| |||||||| ||||||| ||     
T  271054 agtataattttaagtgattcatagagaaagaattatactgatgtatatctaaaattgaatcatatatatctccatcgaattttcacaacattgtcttac- 270956  T
Q  615 tttttaacattcatcttttctatgatacgtatgtgtgaaatat 657  Q
     ||||| | ||||||||||||| ||| || || ||||||||||    
T  270955 cttttatccttcatcttttctaagatgcgcatttgtgaaatat 270913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 558 - 632
Target Start/End: Complemental strand, 781929 - 781855
Alignment:
Q  558 catatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttttttaacattcatcttt 632  Q
    ||||| ||||||||||| |||||||| | ||||||| |||||||| |||||||||  |||||||| |||||||||    
T  781929 catatctaaaattgaatcatatacatattcattgaattttcacaacattgtctcaaatttttaactttcatcttt 781855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 661 - 758
Target Start/End: Complemental strand, 10443497 - 10443401
Alignment:
Q  661 gtgtatctatgaaacatcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatc 758  Q
    |||||||||||||| ||| |||||||||  ||||||||||||||| ||||||||||  |||||||  ||||||| ||  |||| ||| ||||||||||    
T  10443497 gtgtatctatgaaatatcctataagtattagataaaatatttttt-aaaattaaaataattaattccgatactttgtgggtacgtatccgcgagtatc 10443401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 659 - 736
Target Start/End: Original strand, 25294715 - 25294792
Alignment:
Q  659 ttgtgtatctatgaaacatcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcg 736  Q
    |||||||||| || |  |||| |||||||||||||||||||||| |||||||||||||  |||||||  |||||||||    
T  25294715 ttgtgtatctgtggagtatcacataagtatccgataaaatatttattaaaaattaaaataattaattccgatacttcg 25294792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 517 - 653
Target Start/End: Original strand, 38682924 - 38683061
Alignment:
Q  517 tataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttt 616  Q
    ||||||||||| ||||| ||| |||||||||| || | |||||||| ||||||||||| |||||||| |||| | || | | |||| ||| | ||| |||    
T  38682924 tataattttaagtggttaatcgagaaacaattctattgatgcatatctaaaattgaatcatatacatctccactaaattgttacaacattatttcatttt 38683023  T
Q  617 tttaacattcatc-ttttctatgatacgtatgtgtgaa 653  Q
    |||| | |||||| ||||||| ||||| ||| ||||||    
T  38683024 tttacccttcatctttttctaggatacatatctgtgaa 38683061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 659 - 775
Target Start/End: Original strand, 31513775 - 31513891
Alignment:
Q  659 ttgtgtatctatgaaacatcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatc 758  Q
    |||||||||| || |  |||| |||||||||||||||||||||| |||||||||||||  |||||||  |||| |||||   ||  ||| ||||||||||    
T  31513775 ttgtgtatctgtggagtatcacataagtatccgataaaatatttattaaaaattaaaataattaattccgatagttcgtggatatgtatccgcgagtatc 31513874  T
Q  759 catataatatcggtatc 775  Q
    | || | ||||||||||    
T  31513875 cgtaaagtatcggtatc 31513891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 521 - 616
Target Start/End: Original strand, 4973086 - 4973181
Alignment:
Q  521 attttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttt 616  Q
    ||||||| | ||| ||| |||||||||| |||  ||| |||| ||||||||||| ||||| || |||| |||| ||| ||||||||||||||||||    
T  4973086 attttaagttgttcatcgagaaacaattctacagatgtatatctaaaattgaatcatatatatctccactgaatttttacaatattgtctcacttt 4973181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 757
Target Start/End: Original strand, 4973256 - 4973337
Alignment:
Q  676 atcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtat 757  Q
    |||||||||||||| ||||||||||||||| |||||| |||  ||||||| | ||| |||||  |||| ||| |||||||||    
T  4973256 atcatataagtatctgataaaatatttttttaaaatttaaataattaattctcatatttcgtgggtacgtatccgcgagtat 4973337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 680 - 733
Target Start/End: Original strand, 50461390 - 50461443
Alignment:
Q  680 tataagtatccgataaaatattttttaaaaattaaaacgattaattttgatact 733  Q
    ||||||||| ||||||||||| |||| ||||||||||  |||||||||||||||    
T  50461390 tataagtattcgataaaatatatttttaaaattaaaataattaattttgatact 50461443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 558 - 653
Target Start/End: Complemental strand, 13643894 - 13643799
Alignment:
Q  558 catatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttttttaacattcatcttttc-tatgatacgtatgtgtgaa 653  Q
    ||||| ||||||||||| |||||||| || |||||| ||| ||||  |||||||||||||||  | ||||||||||| |||||||||| | ||||||    
T  13643894 catatctaaaattgaatcatatacatctctattgaatttttacaacgttgtctcactttttt-cccttcatcttttcttatgatacgtgtatgtgaa 13643799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 737
Target Start/End: Complemental strand, 17116190 - 17116135
Alignment:
Q  682 taagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgt 737  Q
    |||||||||||||||||||||  ||||||||||||  |||||||  ||||||||||    
T  17116190 taagtatccgataaaatatttaataaaaattaaaataattaattccgatacttcgt 17116135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 676 - 759
Target Start/End: Complemental strand, 40693878 - 40693795
Alignment:
Q  676 atcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatcc 759  Q
    |||| ||| |||||||||||||||||| |||||||||||||  |||||||   |||||||||   ||| ||| |||||||||||    
T  40693878 atcacatatgtatccgataaaatatttattaaaaattaaaataattaattccaatacttcgtggatacgtatccgcgagtatcc 40693795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 518 - 646
Target Start/End: Original strand, 11767649 - 11767778
Alignment:
Q  518 ataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcactttt 617  Q
    |||||||||| ||||| ||| ||||| |||| || | |||||||| ||||||||||| ||||| ||  | |  ||| ||| |||| |||||||||| |||    
T  11767649 ataattttaagtggttaatcgagaaaaaattctagttatgcatatctaaaattgaatcatatatatcgctaccgaatttttacaacattgtctcacattt 11767748  T
Q  618 ttaacattcatc-ttttctatgatacgtat 646  Q
    |||   |||||| ||||||| |||||||||    
T  11767749 ttactcttcatctttttctaggatacgtat 11767778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 3e-26; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 517 - 642
Target Start/End: Original strand, 16756079 - 16756204
Alignment:
Q  517 tataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttt 616  Q
    ||||||||||| ||||  ||| | |||||||||||||||||||||| ||||||||||| |||||||| ||| |||||||||| ||| |||||||||||||    
T  16756079 tataattttaagtggtcaatcgataaacaattttactaatgcatatctaaaattgaatcatatacatctccgttgaactttcgcaacattgtctcacttt 16756178  T
Q  617 tttaacattcatcttttctatgatac 642  Q
    |||  | ||||| ||||||| |||||    
T  16756179 tttgtccttcatattttctaggatac 16756204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 659 - 775
Target Start/End: Complemental strand, 7057068 - 7056953
Alignment:
Q  659 ttgtgtatctatgaaacatcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatc 758  Q
    ||||||||||||| |  ||| |||||||||| ||||||||||||||||||||||||||  |||||||| ||||||||||  |||| ||||| ||||||||    
T  7057068 ttgtgtatctatggagtatcctataagtatcagataaaatattttttaaaaattaaaa-tattaatttcgatacttcgtgggtacgtattcacgagtatc 7056970  T
Q  759 catataatatcggtatc 775  Q
    | || | ||||||||||    
T  7056969 cgtagagtatcggtatc 7056953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 676 - 759
Target Start/End: Original strand, 19100207 - 19100290
Alignment:
Q  676 atcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatcc 759  Q
    |||| |||||||||||||||||||||| |||||||||||||  ||||||||  |||||||||| |||||||| |||||||||||    
T  19100207 atcacataagtatccgataaaatatttattaaaaattaaaataattaatttcaatacttcgtaggtacatatccgcgagtatcc 19100290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 515 - 652
Target Start/End: Original strand, 13407261 - 13407398
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| ||||| ||| |||||||||| |||| ||| |||| ||||||||||| |||||  |||| | |||| ||  |||| ||||||||| |    
T  13407261 agtataattttaactggttcatcgagaaacaattatactgatgtatatctaaaattgaatcatataagtttctactgaatttctacaacattgtctcaat 13407360  T
Q  615 tttttaacattcatcttttctatgatacgtatgtgtga 652  Q
    |||||  | ||||||||||||| ||||||||| |||||    
T  13407361 tttttctccttcatcttttctaggatacgtatttgtga 13407398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 515 - 636
Target Start/End: Original strand, 32076537 - 32076658
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||| ||||| |||||| || ||||||||||||| | |||||||| ||||||||||  ||| |||| || | |||| ||| |||| |||||||||||    
T  32076537 agtataaatttaagtggtttgtcgagaaacaattttaatgatgcatatctaaaattgaactatacacatctctactgaaattttacaacattgtctcact 32076636  T
Q  615 tttttaacattcatcttttcta 636  Q
    |||||| | |||||||||||||    
T  32076637 tttttacccttcatcttttcta 32076658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 515 - 633
Target Start/End: Complemental strand, 26565077 - 26564959
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| ||||||||| |||||||||| || | || ||||| ||||||||||| ||||||||| | ||||||  || |||| ||| |||||||    
T  26565077 agtataattttaagtggtttatcaagaaacaattatagtgatacatatctaaaattgaatcatatacattgctattgaatgtttacaacattatctcact 26564978  T
Q  615 tttttaacattcatctttt 633  Q
    ||||||   ||||||||||    
T  26564977 tttttactcttcatctttt 26564959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 515 - 657
Target Start/End: Complemental strand, 41368727 - 41368586
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||| | ||||| ||| ||||||| ||  ||  |||||||| |||||||||||||  ||||||||  | ||| |||||||| |||||||||||    
T  41368727 agtataatttttagtggttcatcaagaaacatttacaccgatgcatatctaaaattgaataacgtacatttcgct-gaattttcacaagattgtctcact 41368629  T
Q  615 tttttaacattcatcttttctatgatacgtatgtgtgaaatat 657  Q
    |||||| | ||||||||||||| |||| |||| ||| ||||||    
T  41368628 tttttacctttcatcttttctaggatatgtatttgtaaaatat 41368586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 503 - 646
Target Start/End: Complemental strand, 3387414 - 3387271
Alignment:
Q  503 tcatatacatggagtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaa 602  Q
    ||||||||| | ||||||| ||||| ||||| ||  |||||||||| || | |||||||  ||||||||||  ||| || | || | |||| ||| ||||    
T  3387414 tcatatacaagaagtataaatttaagtggttcattgagaaacaattctaatgatgcataaataaaattgaaatatacacgtctctactgaatttttacaa 3387315  T
Q  603 tattgtctcacttttttaacattcatcttttctatgatacgtat 646  Q
     ||||||||||||||||| | ||||||||||||| |||||||||    
T  3387314 cattgtctcacttttttacccttcatcttttctaggatacgtat 3387271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 515 - 646
Target Start/End: Complemental strand, 5836631 - 5836500
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| ||||| ||| |||||||||| |||  || ||||| ||||||||||| |||||||| | || |||| |||||||| ||||||||||     
T  5836631 agtataattttaagtggttcatcgagaaacaattataccgatacatatataaaattgaatcatatacatcttcactgaattttcacaacattgtctcacc 5836532  T
Q  615 tttttaacattcatcttttctatgatacgtat 646  Q
    |||  | | ||||| |||||||  ||||||||    
T  5836531 tttgcacccttcatattttctagaatacgtat 5836500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 515 - 735
Target Start/End: Original strand, 29231078 - 29231311
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| || || ||| |||||||||| || | |||||||| ||||||||| | |||||||| |  | |||| ||| |||| |||||||||||    
T  29231078 agtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgtctcact 29231177  T
Q  615 tttttaacattcatc-ttttctatgatacgtatgtgtgaaatat------------attgtgtatctatgaaacatcatataagtatccgataaaatatt 701  Q
    ||||||   |||||| ||||||| ||||||| | |||||| |||             |||||||| | || |  |||| |||||||||||||||||||||    
T  29231178 tttttagtcttcatctttttctaggatacgtgtctgtgaagtatcttaaaaatatccttgtgtatatgtggagtatcacataagtatccgataaaatatt 29231277  T
Q  702 ttttaaaaattaaaacgattaattttgatacttc 735  Q
    | |||||||||||||  |||||||  ||||||||    
T  29231278 tattaaaaattaaaataattaattccgatacttc 29231311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 515 - 583
Target Start/End: Original strand, 31113999 - 31114067
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacat 583  Q
    ||||||||||||| ||||| | |  ||||||||||||||||||||||| ||||||||||| ||||||||    
T  31113999 agtataattttaagtggttcaccgtgaaacaattttactaatgcatatctaaaattgaatcatatacat 31114067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 676 - 759
Target Start/End: Original strand, 34764764 - 34764847
Alignment:
Q  676 atcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatcc 759  Q
    ||||||||||||| |||||||||||||||| |||||| |||  ||||||| |||||||||||  || | ||| |||||||||||    
T  34764764 atcatataagtattcgataaaatatttttttaaaatttaaataattaattctgatacttcgtgggtgcgtatccgcgagtatcc 34764847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 515 - 633
Target Start/End: Original strand, 2627963 - 2628081
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| ||||| ||| | |||||||| || | |||||||| ||||||||||| |||||||| || | ||||  || |||| | |||||||||    
T  2627963 agtataattttaagtggttcatcgataaacaattctaattatgcatatctaaaattgaatcatatacatctctactgaatgtttacaacactgtctcact 2628062  T
Q  615 tttttaacattcatctttt 633  Q
    ||||||   ||||||||||    
T  2628063 tttttactcttcatctttt 2628081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 545 - 653
Target Start/End: Original strand, 31210891 - 31210999
Alignment:
Q  545 aattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttttttaacattcatcttttctatgatacgt 644  Q
    |||| |||| |||||| ||||||||| ||| ||||||||||| | |||| ||| |||| | ||||||| ||||||| | ||||| ||||||| ||||| |    
T  31210891 aattctactgatgcatgtttaaaattaaatcatatacatttctactgaatttttacaacactgtctcatttttttacccttcatattttctaagatacat 31210990  T
Q  645 atgtgtgaa 653  Q
    || ||||||    
T  31210991 atctgtgaa 31210999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 646
Target Start/End: Complemental strand, 34510964 - 34510832
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| ||||| ||| | ||||||| ||| | |||||||| |||| || ||| |||||||| || |||||   || |||||||| |||||||    
T  34510964 agtataattttaagtggttcatcgaaaaacaatgttagttatgcatatctaaatttaaatcatatacatctctattgagtgtttacaatattatctcact 34510865  T
Q  615 tttttaacattcatc-ttttctatgatacgtat 646  Q
    ||||||   |||||| ||||||| |||||||||    
T  34510864 tttttactcttcatctttttctacgatacgtat 34510832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 679 - 734
Target Start/End: Original strand, 31114174 - 31114229
Alignment:
Q  679 atataagtatccgataaaatattttttaaaaattaaaacgattaattttgatactt 734  Q
    ||||||||||| ||||| ||||||||||||||||||||  ||||||| ||||||||    
T  31114174 atataagtatctgataatatattttttaaaaattaaaataattaattctgatactt 31114229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 663 - 716
Target Start/End: Original strand, 14202899 - 14202952
Alignment:
Q  663 gtatctatgaaacatcatataagtatccgataaaatattttttaaaaattaaaa 716  Q
    |||| ||||||| ||| |||||||||||||| ||| ||||||||||||||||||    
T  14202899 gtatttatgaaatatcttataagtatccgatgaaagattttttaaaaattaaaa 14202952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 680 - 759
Target Start/End: Complemental strand, 39935561 - 39935481
Alignment:
Q  680 tataagtatccgataaaatattttttaa-aaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatcc 759  Q
    |||| |||||||||||||||||||||   |||||||||  ||||||| ||||||||||| | ||| ||| |||||||||||    
T  39935561 tatatgtatccgataaaatatttttttttaaattaaaataattaattatgatacttcgtgaatacgtatccgcgagtatcc 39935481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 691 - 737
Target Start/End: Complemental strand, 3387214 - 3387168
Alignment:
Q  691 gataaaatattttttaaaaattaaaacgattaattttgatacttcgt 737  Q
    |||||| ||||||| |||||||||||  |||||||||||||||||||    
T  3387214 gataaattatttttcaaaaattaaaataattaattttgatacttcgt 3387168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 683 - 725
Target Start/End: Original strand, 13407441 - 13407483
Alignment:
Q  683 aagtatccgataaaatattttttaaaaattaaaacgattaatt 725  Q
    ||||||| ||||||||||||||||||||||||||  |||||||    
T  13407441 aagtatcagataaaatattttttaaaaattaaaataattaatt 13407483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 563 - 636
Target Start/End: Original strand, 28470233 - 28470306
Alignment:
Q  563 ttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttttttaacattcatcttttcta 636  Q
    |||||||||||| |||||||| || | |||| ||||| || ||| ||||||||||||| | |||| ||||||||    
T  28470233 ttaaaattgaattatatacatctctagtgaattttcataaaattatctcacttttttacccttcaacttttcta 28470306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 2e-24; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 515 - 657
Target Start/End: Original strand, 52204126 - 52204268
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| | ||| |||  |||||||||||||| || ||||||||||||||| | ||||||||||| | | || ||| |||| |||||||||||    
T  52204126 agtataattttaagtagttcatcgggaaacaattttactcattcatatttaaaattgattcatatacatttctactaaatttttacaacattgtctcact 52204225  T
Q  615 tttttaacattcatcttttctatgatacgtatgtgtgaaatat 657  Q
    || ||| | |||||| |||||| ||||||||| ||||||||||    
T  52204226 ttcttacccttcatcatttctaggatacgtatttgtgaaatat 52204268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 518 - 734
Target Start/End: Complemental strand, 40614940 - 40614723
Alignment:
Q  518 ataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcactttt 617  Q
    |||| ||||| ||||| ||| |||||||| | || | ||| |||| ||||||||||  |||||||| || | |||| ||| |||||||||||||||||||    
T  40614940 ataaatttaagtggttcatcgagaaacaactctaatgatgtatatctaaaattgaaccatatacatctctaatgaatttttacaatattgtctcactttt 40614841  T
Q  618 ttaacattcatcttttctatgatacgtatgtgtgaaatatattgt--gtatctatgaaacatcatataagtatccgataaaatattttttaaaaattaaa 715  Q
    ||| | ||||||||||||| ||||||||| | |||| ||| || |  |||||| ||    |||    ||||||||||||||||||||||||||| |||||    
T  40614840 ttacctttcatcttttctaagatacgtatctatgaagtatcttataagtatctttg-tgtatctgtgaagtatccgataaaatattttttaaaagttaaa 40614742  T
Q  716 acgattaattttgatactt 734  Q
    |  ||||||| ||||||||    
T  40614741 ataattaattctgatactt 40614723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 517 - 620
Target Start/End: Complemental strand, 20619381 - 20619278
Alignment:
Q  517 tataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttt 616  Q
    ||||||||||| ||||| ||| | ||| |||| |||| |||||||| ||||||||||| ||||||||||||| |||| |||||||| ||||| | |||||    
T  20619381 tataattttaagtggttgatcgaaaaataattatacttatgcatatctaaaattgaatcatatacatttccactgaattttcacaacattgtttgacttt 20619282  T
Q  617 ttta 620  Q
    ||||    
T  20619281 ttta 20619278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 517 - 658
Target Start/End: Complemental strand, 29324201 - 29324059
Alignment:
Q  517 tataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttt 616  Q
    ||||||||||| ||||| ||| |||||||||| || | |||||||| ||||||||||| |||||||| |  |||||| ||| |||| |||| ||||||||    
T  29324201 tataattttaagtggttcatcgagaaacaattatattgatgcatatctaaaattgaatgatatacatctttattgaagttttacaacattgcctcacttt 29324102  T
Q  617 tttaacattcatc-ttttctatgatacgtatgtgtgaaatata 658  Q
    ||||   |||||| |||| || ||||||||| |||||| ||||    
T  29324101 tttactcttcatctttttttaggatacgtatttgtgaagtata 29324059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 676 - 756
Target Start/End: Original strand, 46979527 - 46979607
Alignment:
Q  676 atcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagta 756  Q
    |||| |||||||||||||||||||||| |||||||||||||  ||||||| |||||||| ||  ||||||||| |||||||    
T  46979527 atcaaataagtatccgataaaatatttattaaaaattaaaataattaattctgatactttgtgggtacatatttgcgagta 46979607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 515 - 653
Target Start/End: Original strand, 27164029 - 27164166
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||| ||||| ||||| ||| ||||| |||| || | |||||||| ||||||||||| |||||||| || | |||| ||  ||||  ||||||||||    
T  27164029 agtataaatttaagtggttcatcgagaaataattatattgatgcatatctaaaattgaatcatatacatctctactgaatttctacaacgttgtctcact 27164128  T
Q  615 tttttaacattcatcttttctatgatacgtatgtgtgaa 653  Q
    |||||  | ||||||||||||| ||||||||| ||||||    
T  27164129 ttttt-cccttcatcttttctaggatacgtatatgtgaa 27164166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 515 - 657
Target Start/End: Original strand, 38489727 - 38489870
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| ||||| ||| |||||||||| || | |||||||| ||||||||||| |||||||| || | ||||  || |||| ||| | |||||    
T  38489727 agtataattttaagtggttcatcgagaaacaattatagttatgcatatctaaaattgaatcatatacatctctactgaatgtttacaacattatatcact 38489826  T
Q  615 tttttaacattcatcttttctatgatacg--tatgtgtgaaatat 657  Q
    ||||||  |||||| |||| || ||||||  ||||||||||||||    
T  38489827 tttttactattcat-ttttttaggatacgtatatgtgtgaaatat 38489870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 515 - 737
Target Start/End: Complemental strand, 36504942 - 36504720
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    |||| |||||||| ||||| ||| |||||||||| || | |||||||| ||||||||||  ||||||||  | | ||||  || |||| |||||||||||    
T  36504942 agtagaattttaattggttcatcgagaaacaattctagtgatgcatatctaaaattgaaccatatacatc-ctactgaatgtt-acaacattgtctcact 36504845  T
Q  615 tttttaacattcatctttt-ctatgatacgtatgtgtgaaatatat-tgtgtatctatgaaacatcatataagtatccgataaaatattttttaaaaatt 712  Q
    | ||||   |||||||||| ||| ||||||||| |||||| | |   ||| |||||  | |  ||| |||||||||||| || |||||||||||||||||    
T  36504844 tgtttactcttcatctttttctaggatacgtatctgtgaagtctccatgtctatctgcggagtatcgtataagtatccgttataatattttttaaaaatt 36504745  T
Q  713 aaaacgattaattttgatacttcgt 737  Q
     |||  |||||||||||||||||||    
T  36504744 taaataattaattttgatacttcgt 36504720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 691 - 758
Target Start/End: Original strand, 51241443 - 51241510
Alignment:
Q  691 gataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatc 758  Q
    ||||||||||||||||||||||||||  ||||||| | ||||||| || |||||||| ||||||||||    
T  51241443 gataaaatattttttaaaaattaaaataattaattctcatacttcataggtacatatccgcgagtatc 51241510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 683 - 737
Target Start/End: Original strand, 7629376 - 7629430
Alignment:
Q  683 aagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgt 737  Q
    |||||||||||||||||||| |||||||||||||  ||||||| |||||||||||    
T  7629376 aagtatccgataaaatatttattaaaaattaaaataattaattctgatacttcgt 7629430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 515 - 633
Target Start/End: Complemental strand, 45472721 - 45472603
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||  || || ||| |||||||||| || | |||||||| ||||||||||| |||||||| || ||||||  || |||| ||||||| |||    
T  45472721 agtataattttacgtgattcatcgagaaacaattctagtgatgcatatctaaaattgaatcatatacatctctattgaatgtttacaacattgtctaact 45472622  T
Q  615 tttttaacattcatctttt 633  Q
    ||||||   ||||||||||    
T  45472621 tttttactcttcatctttt 45472603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 517 - 653
Target Start/End: Original strand, 20179036 - 20179169
Alignment:
Q  517 tataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttt 616  Q
    ||||||||||| ||||| ||| ||||||||||  ||| || ||||| ||||||||||| |||||||| |||  |||| ||  |||| |||||||||| ||    
T  20179036 tataattttaagtggttcatcaagaaacaattcaactgatacatatctaaaattgaatcatatacatctcc--tgaatttctacaacattgtctcac-tt 20179132  T
Q  617 tttaacattcatcttttctatgatacgtatgtgtgaa 653  Q
    |||  | ||||||||||||| ||||||| | ||||||    
T  20179133 tttccccttcatcttttctaggatacgtttctgtgaa 20179169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 691 - 743
Target Start/End: Complemental strand, 35296368 - 35296316
Alignment:
Q  691 gataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtac 743  Q
    ||||||||||||||||||||||||||  |||||||  ||||||||||||||||    
T  35296368 gataaaatattttttaaaaattaaaataattaattccgatacttcgtaagtac 35296316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 539 - 657
Target Start/End: Original strand, 20369272 - 20369389
Alignment:
Q  539 agaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttttttaacattcatcttttctatg 638  Q
    |||||||||| || | ||||| || ||||||||||| |||||||| || | | || |||||||| ||||| ||||||||||| | || |||||||| | |    
T  20369272 agaaacaattatattgatgca-atctaaaattgaatcatatacatctcaaattaattttcacaacattgtatcacttttttacccttaatcttttcaagg 20369370  T
Q  639 atacgtatgtgtgaaatat 657  Q
    ||| |||| ||||||||||    
T  20369371 atatgtatatgtgaaatat 20369389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 679 - 737
Target Start/End: Complemental strand, 29324018 - 29323960
Alignment:
Q  679 atataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgt 737  Q
    ||||||||||  |||||||||||||| |||||||||||  |||||||| ||||||||||    
T  29324018 atataagtattggataaaatatttttaaaaaattaaaataattaatttcgatacttcgt 29323960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 515 - 618
Target Start/End: Complemental strand, 32835360 - 32835255
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattg--aataatatacatttccattgaactttcacaatattgtctca 612  Q
    ||||||||||||| ||||| ||  || ||||||| || |||||||||| ||||||||  ||| |||||||| || | |||| ||| |||| |||||||||    
T  32835360 agtataattttaagtggttcattgagcaacaattctattaatgcatatctaaaattgaaaatcatatacatctcaactgaatttttacaacattgtctca 32835261  T
Q  613 cttttt 618  Q
    ||||||    
T  32835260 cttttt 32835255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 517 - 611
Target Start/End: Original strand, 52203963 - 52204057
Alignment:
Q  517 tataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctc 611  Q
    ||||||||||| | ||| |||  |||||||||||||| || ||||||||||||||| | ||||||||||| | | || ||| |||| ||||||||    
T  52203963 tataattttaagtagttcatcgggaaacaattttactcattcatatttaaaattgattcatatacatttctactaaatttttacaacattgtctc 52204057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 529 - 657
Target Start/End: Original strand, 52695578 - 52695706
Alignment:
Q  529 tggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttttttaacattcat 628  Q
    ||||| ||| ||||| |||| || | |||||||| ||||||||||  ||| |||| || |  ||| ||| |||| ||||||||||||||| | | |||||    
T  52695578 tggttcatcaagaaataattctaatgatgcatatctaaaattgaaccatacacatctctacggaatttttacaaaattgtctcactttttgacccttcat 52695677  T
Q  629 cttttctatgatacgtatgtgtgaaatat 657  Q
    ||||| || |||| |||| ||||||||||    
T  52695678 cttttataggataagtatctgtgaaatat 52695706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 686 - 773
Target Start/End: Original strand, 34026887 - 34026974
Alignment:
Q  686 tatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatccatataatatcggta 773  Q
    |||| |||||||||| |||||||||||||||  ||||| ||  |||||| || ||||| |||  ||||||||||||| | ||||||||    
T  34026887 tatctgataaaatatattttaaaaattaaaataattaacttcaatactttgtcagtacgtatctgcgagtatccataaagtatcggta 34026974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 757
Target Start/End: Original strand, 24611640 - 24611717
Alignment:
Q  680 tataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtat 757  Q
    ||||||||||||||||||||| | ||  |||||||||  ||||||| ||||||| ||| | ||| ||| |||||||||    
T  24611640 tataagtatccgataaaatatgtattttaaattaaaataattaattctgatactccgtgaatacgtatccgcgagtat 24611717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 675 - 760
Target Start/End: Original strand, 36172111 - 36172196
Alignment:
Q  675 catcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatcca 760  Q
    |||| ||||||||||||||||||||| | ||  |||||||||  ||||||| ||||||| |||  |||| ||| || |||||||||    
T  36172111 catcttataagtatccgataaaatatatattttaaattaaaataattaattctgatactccgtgggtacgtatccgagagtatcca 36172196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 733
Target Start/End: Complemental strand, 43471721 - 43471668
Alignment:
Q  680 tataagtatccgataaaatattttttaaaaattaaaacgattaattttgatact 733  Q
    ||||||||||||||||||||| | || ||||||||||  ||||||| |||||||    
T  43471721 tataagtatccgataaaatatatatttaaaattaaaataattaattctgatact 43471668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 737
Target Start/End: Original strand, 52695746 - 52695799
Alignment:
Q  685 gtatccgataaaatatttt-ttaaaaattaaaacgattaattttgatacttcgt 737  Q
    |||||| |||||||||||| |||||||||||||  ||||||| |||||||||||    
T  52695746 gtatccaataaaatatttttttaaaaattaaaataattaattctgatacttcgt 52695799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 3e-23; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 514 - 646
Target Start/End: Complemental strand, 11990868 - 11990736
Alignment:
Q  514 gagtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcac 613  Q
    |||||||||||| | ||||||||| |||||||||| ||||||||||||| ||||||||| | |||||||| |||| |||| |||| ||| | |||| |||    
T  11990868 gagtataatttttagtggtttatctagaaacaattctactaatgcatatctaaaattgagttatatacatatccactgaattttcgcaacaatgtcacac 11990769  T
Q  614 ttttttaacattcatcttttctatgatacgtat 646  Q
    |||| || | ||||||||||||| |||| ||||    
T  11990768 ttttctacccttcatcttttctaggatatgtat 11990736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 515 - 759
Target Start/End: Complemental strand, 25430144 - 25429887
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| ||||| |||  ||||||||| ||||||||||||| ||||||||||| ||||| || |    |||| ||| |||| |||||||||||    
T  25430144 agtataattttaagtggttcatcgtgaaacaattctactaatgcatatctaaaattgaatcatatatatctgtcatgaatttttacaacattgtctcact 25430045  T
Q  615 tttttaacattcatc-ttttctatgatacgtatgtgtgaaatat------------attgtgtatctatgaaacatcatataagtatccgataaaatatt 701  Q
    |||||| | |||||| ||||||| ||||| ||| || ||| |||             |||||||||| || |  |||||||||||||||  ||| |||||    
T  25430044 tttttacccttcatctttttctaggatacatatatgcgaagtatcttataagtatccttgtgtatctgtggattatcatataagtatccattaatatatt 25429945  T
Q  702 ttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatcc 759  Q
    |||||||||||||||  ||||||| ||||||||| |  |||| ||| |||||||||||    
T  25429944 ttttaaaaattaaaataattaattctgatacttcatgggtacgtatccgcgagtatcc 25429887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 517 - 620
Target Start/End: Original strand, 18928564 - 18928667
Alignment:
Q  517 tataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttt 616  Q
    ||||||||||| ||||| ||| |||||||||| |||| |||||||| ||||||||||| |||||||| || ||| || ||| |||| ||||||||| |||    
T  18928564 tataattttaagtggttcatcgagaaacaattctactgatgcatatctaaaattgaatcatatacatctcaattcaatttttacaacattgtctcaattt 18928663  T
Q  617 ttta 620  Q
    ||||    
T  18928664 ttta 18928667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 515 - 633
Target Start/End: Original strand, 24888769 - 24888887
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| ||||| | |  ||||||||| ||||||||||||| ||||||||||| ||||| ||||    |||| ||| ||||||||||||||||    
T  24888769 agtataattttaagtggttcaccgtgaaacaattctactaatgcatatctaaaattgaatcatatatatttgtcatgaatttttacaatattgtctcact 24888868  T
Q  615 tttttaacattcatctttt 633  Q
    | |||| | ||||||||||    
T  24888869 tgtttacccttcatctttt 24888887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 517 - 620
Target Start/End: Complemental strand, 6166554 - 6166451
Alignment:
Q  517 tataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttt 616  Q
    ||||||||||| || || ||| |||| ||||| |||| |||||||| ||||||||||| ||||||||||  | |||| ||| |||| |||||||||||||    
T  6166554 tataattttaagtgtttcatcgagaatcaattatactgatgcatatctaaaattgaatcatatacatttataatgaatttttacaacattgtctcacttt 6166455  T
Q  617 ttta 620  Q
    ||||    
T  6166454 ttta 6166451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 676 - 759
Target Start/End: Original strand, 24888943 - 24889026
Alignment:
Q  676 atcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatcc 759  Q
    ||||||||||||||| |||| ||||||||||||||||||||  ||||||| ||||||||| |  |||| ||| |||||||||||    
T  24888943 atcatataagtatccaataatatattttttaaaaattaaaataattaattctgatacttcatgggtacgtatccgcgagtatcc 24889026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 683 - 781
Target Start/End: Original strand, 11789555 - 11789653
Alignment:
Q  683 aagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatccatataatatcggtatctaatac 781  Q
    |||||||||||||||||||| |||||||||||||  ||||||| |||||||||||   ||| ||| ||||||||||| |  | ||||||||||| ||||    
T  11789555 aagtatccgataaaatatttattaaaaattaaaataattaattctgatacttcgtggatacgtatccgcgagtatccgtggagtatcggtatctgatac 11789653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 515 - 657
Target Start/End: Complemental strand, 12006835 - 12006694
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    |||||||||||||  |||| ||| | |||||||| || | |||||||| ||||||||||| |||||||| |||| |||| |||||||| |||||| ||||    
T  12006835 agtataattttaagcggttcatcaaaaaacaattctagtgatgcatatctaaaattgaatcatatacatctccactgaattttcacaacattgtc-cact 12006737  T
Q  615 tttttaacattcatcttttctatgatacgtatgtgtgaaatat 657  Q
    |||| | | || || ||||||| ||| ||||| || |||||||    
T  12006736 ttttcaccctttattttttctaggatgcgtatatgggaaatat 12006694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 680 - 737
Target Start/End: Original strand, 11755846 - 11755903
Alignment:
Q  680 tataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgt 737  Q
    |||||||||||||||||||||||||||||||||||||   |||||| | |||||||||    
T  11755846 tataagtatccgataaaatattttttaaaaattaaaatatttaattataatacttcgt 11755903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 564 - 617
Target Start/End: Complemental strand, 26079507 - 26079454
Alignment:
Q  564 taaaattgaataatatacatttccattgaactttcacaatattgtctcactttt 617  Q
    |||||||||||  |||||||||||| |||| |||||||||||||||||||||||    
T  26079507 taaaattgaattttatacatttccactgaattttcacaatattgtctcactttt 26079454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 681 - 737
Target Start/End: Complemental strand, 9409875 - 9409819
Alignment:
Q  681 ataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgt 737  Q
    ||||||||||||||| |||||| |||||||||||||  ||||||| |||||||||||    
T  9409875 ataagtatccgataacatatttattaaaaattaaaataattaattatgatacttcgt 9409819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 619
Target Start/End: Complemental strand, 18320831 - 18320728
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||| |  | || ||| ||||||| || |||| |||||||| ||||||||||| |||||||| |||| | || |||||||| |||||||||||    
T  18320831 agtataattttgagcgattcatcaagaaacatttctacttatgcatatctaaaattgaatcatatacatctccact-aaatttcacaacattgtctcact 18320733  T
Q  615 ttttt 619  Q
    |||||    
T  18320732 ttttt 18320728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 517 - 636
Target Start/End: Original strand, 31431395 - 31431515
Alignment:
Q  517 tataattttaaatggtttatccagaaacaattttactaatgcatatttaa-aattgaataatatacatttccattgaactttcacaatattgtctcactt 615  Q
    ||||||||||| ||||| ||| | |||||||| || |||| ||||| ||| |||||||| |||||||| | |  |||| ||| ||||||||||||||||     
T  31431395 tataattttaagtggttcatcaaaaaacaattctattaatacatatctaataattgaatcatatacatctgcgctgaatttttacaatattgtctcactc 31431494  T
Q  616 ttttaacattcatcttttcta 636  Q
    ||||| | | |||||||||||    
T  31431495 ttttatcctccatcttttcta 31431515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 515 - 574
Target Start/End: Original strand, 11755706 - 11755765
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaat 574  Q
    |||||||||||||  |||| ||| |||||||||| ||||||||||||| |||||||||||    
T  11755706 agtataattttaagcggttcatcaagaaacaattctactaatgcatatctaaaattgaat 11755765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 539 - 758
Target Start/End: Complemental strand, 13003459 - 13003232
Alignment:
Q  539 agaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttttttaacattcatcttttctatg 638  Q
    |||||||||| || | |||||||| ||||||||||| |||||||  || |||||| ||  |||| |||||||||||||||  || ||||| ||||||| |    
T  13003459 agaaacaattctagttatgcatatctaaaattgaatcatataca--tctattgaatttctacaacattgtctcactttttacac-ttcatattttctacg 13003363  T
Q  639 atacgtatgtgtgaaatat------------attgtgtatctatgaaacatcatataagtatccgataaaatattttttaaaaattaaaacgattaattt 726  Q
    || | ||| ||||||||||             ||||| ||||||| |  |||||||||||||  ||||||||||||||| ||||||||||  |||||||     
T  13003362 atgcatatatgtgaaatatcttgtaagtatctttgtgaatctatggagtatcatataagtattagataaaatatttttt-aaaattaaaataattaatta 13003264  T
Q  727 tgatacttcgtaagtacatattcgcgagtatc 758  Q
    |||||||| ||  |||| ||| ||||||||||    
T  13003263 tgatactttgtgggtacgtatccgcgagtatc 13003232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 515 - 653
Target Start/End: Complemental strand, 32856140 - 32856002
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    |||||| |||||| ||||| ||| |||||||||| || | || ||||| ||||||||||| |||||||| || | ||||  || |||| |||||||| ||    
T  32856140 agtatagttttaagtggttcatcgagaaacaattctagtgat-catatctaaaattgaatcatatacatctctactgaatgtttacaacattgtctcgct 32856042  T
Q  615 tttttaacattcatc-ttttctatgatacgtatgtgtgaa 653  Q
    ||||||   |||||| ||||||| ||||||||| ||||||    
T  32856041 tttttactcttcatctttttctaggatacgtatctgtgaa 32856002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 737
Target Start/End: Complemental strand, 6166382 - 6166322
Alignment:
Q  676 atcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgt 737  Q
    |||| |||||||||||||||||||||| |||||||||||||  ||||| | |||||||||||    
T  6166382 atcacataagtatccgataaaatatttattaaaaattaaaataattaa-tatgatacttcgt 6166322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 680 - 737
Target Start/End: Original strand, 17749077 - 17749134
Alignment:
Q  680 tataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgt 737  Q
    |||||||||||| |||||||||||||||||||| |||  ||||||| || ||||||||    
T  17749077 tataagtatccgttaaaatattttttaaaaatttaaataattaattctgttacttcgt 17749134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 518 - 653
Target Start/End: Original strand, 9136732 - 9136867
Alignment:
Q  518 ataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcactttt 617  Q
    |||||||||| ||||| ||| | |||||||| || | || | ||||| ||||||||| |||||  | ||||||||| |||||||| |   ||||||||||    
T  9136732 ataattttaattggttaatcgaaaaacaattatagtgattcttattttaaattgaatcatatatgtctccattgaattttcacaacacaatctcactttt 9136831  T
Q  618 ttaacattcatcttttctatgatacgtatgtgtgaa 653  Q
    ||| | ||||| ||||| | ||||||| | ||||||    
T  9136832 ttacccttcattttttccaggatacgtctctgtgaa 9136867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 676 - 710
Target Start/End: Original strand, 18928735 - 18928769
Alignment:
Q  676 atcatataagtatccgataaaatattttttaaaaa 710  Q
    ||||||||||||||||| |||||||||||||||||    
T  18928735 atcatataagtatccgacaaaatattttttaaaaa 18928769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 678 - 716
Target Start/End: Original strand, 30809046 - 30809084
Alignment:
Q  678 catataagtatccgataaaatattttttaaaaattaaaa 716  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  30809046 catataagtatcagataaaatattttttaaaaaataaaa 30809084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 616
Target Start/End: Original strand, 11789374 - 11789475
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| || || ||| ||||||| || || | |||||||| ||||||||| | |||||||| |  | |||| ||| |||| |||||||||||    
T  11789374 agtataattttaagtgtttcatcgagaaacagttctattgatgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgtctcact 11789473  T
Q  615 tt 616  Q
    ||    
T  11789474 tt 11789475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 1e-22; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 659 - 758
Target Start/End: Complemental strand, 34471726 - 34471627
Alignment:
Q  659 ttgtgtatctatgaaacatcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatc 758  Q
    |||||||||||||||  ||| |||||||||| ||||||||||||||| ||||||||||  ||||||| |||||||||||  ||||||||||| |||||||    
T  34471726 ttgtgtatctatgaagtatcctataagtatcagataaaatatttttttaaaattaaaataattaattctgatacttcgtgggtacatattcgtgagtatc 34471627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 515 - 759
Target Start/End: Original strand, 45648224 - 45648481
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| ||||| | | |||||||||| || | |||||||| ||||||||||| |||||||| |  | |||| ||| |||| |||||||||||    
T  45648224 agtataattttaagtggttcaccgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctcact 45648323  T
Q  615 tttttaacattcatc-ttttctatgatacgtatgtgtgaaatat------------attgtgtatctatgaaacatcatataagtatccgataaaatatt 701  Q
    ||||||    ||||| ||||||| ||||||||| |||||| |||             || ||||||| || |  |||| ||||||| |||||||||||||    
T  45648324 tttttactcctcatctttttctaggatacgtatctgtgaagtatcttagaagtatccttatgtatctgtggagtatcacataagtacccgataaaatatt 45648423  T
Q  702 ttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatcc 759  Q
    | |||||||||||||  |||||||  ||||||||||  |||| ||| |||||||||||    
T  45648424 tattaaaaattaaaataattaattccgatacttcgtgggtacgtatccgcgagtatcc 45648481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 518 - 645
Target Start/End: Complemental strand, 22201218 - 22201092
Alignment:
Q  518 ataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcactttt 617  Q
    |||||||||| ||||||||| |||||||||| |||  || || || ||||||| ||  |||||||| |||| |||| ||| | || ||||||||| ||||    
T  22201218 ataattttaagtggtttatcgagaaacaattctaccgataca-atctaaaattaaaacatatacatctccactgaatttttagaacattgtctcattttt 22201120  T
Q  618 ttaacattcatcttttctatgatacgta 645  Q
    ||| ||||||||||||||||||||||||    
T  22201119 ttaccattcatcttttctatgatacgta 22201092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 518 - 645
Target Start/End: Original strand, 22236603 - 22236729
Alignment:
Q  518 ataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcactttt 617  Q
    |||||||||| ||||||||| |||||||||| |||  || || || ||||||| ||  |||||||| |||| |||| ||| | || ||||||||| ||||    
T  22236603 ataattttaagtggtttatcgagaaacaattctaccgataca-atctaaaattaaaacatatacatctccactgaatttttagaacattgtctcattttt 22236701  T
Q  618 ttaacattcatcttttctatgatacgta 645  Q
    ||| ||||||||||||||||||||||||    
T  22236702 ttaccattcatcttttctatgatacgta 22236729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 659 - 747
Target Start/End: Original strand, 2185895 - 2185983
Alignment:
Q  659 ttgtgtatctatgaaacatcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatat 747  Q
    |||||||| |||| |  |||||||||||||||||||| |||||||||||||||||||   ||||||| ||||||||| | |||||||||    
T  2185895 ttgtgtatatatggagtatcatataagtatccgataatatattttttaaaaattaaattaattaattctgatacttcatgagtacatat 2185983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 515 - 619
Target Start/End: Original strand, 3751496 - 3751600
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| || || ||| ||||||||||||| | |||||||| ||||||||||| |||||||| || | | |  |||||||| |||||||||||    
T  3751496 agtataattttaagtgattcatcgagaaacaattttattgatgcatatctaaaattgaatcatatacatctctactaagttttcacaacattgtctcact 3751595  T
Q  615 ttttt 619  Q
    |||||    
T  3751596 ttttt 3751600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 515 - 759
Target Start/End: Original strand, 47843767 - 47844024
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| |||||  ||  |||||||||||| | |||||||| ||||||||||| |||||||| || | |||  ||| |||| ||||||| |||    
T  47843767 agtataattttaagtggttcgtcaggaaacaattttattgatgcatatctaaaattgaatcatatacatctctactgagtttttacaacattgtctaact 47843866  T
Q  615 tttttaacattcatctttt-ctatgatacgtatgtgtgaaatatatt------------gtgtatctatgaaacatcatataagtatccgataaaatatt 701  Q
    |||||| | |||||||||| ||| |||||| ||  ||||| ||| ||            || |||||  | |  ||||||||||||||||||||||||||    
T  47843867 tttttacccttcatctttttctaggatacgcatacgtgaagtatcttagaagtatccttgtctatctgcggagtatcatataagtatccgataaaatatt 47843966  T
Q  702 ttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatcc 759  Q
    ||| |||||| ||||  |||||||  ||||||||||  |||| ||| |||||||||||    
T  47843967 tttaaaaaatcaaaataattaattgagatacttcgtgggtacgtatccgcgagtatcc 47844024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 676 - 716
Target Start/End: Original strand, 22543534 - 22543574
Alignment:
Q  676 atcatataagtatccgataaaatattttttaaaaattaaaa 716  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22543534 atcatataagtatccgataaaatattttttaaaaattaaaa 22543574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 516 - 620
Target Start/End: Original strand, 43495755 - 43495859
Alignment:
Q  516 gtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcactt 615  Q
    |||||||||||| ||||| ||| ||||||||||||| | |||||||| ||||||||||| ||||| || || | || |  || |||| ||||||||||||    
T  43495755 gtataattttaagtggttcatcgagaaacaattttagtgatgcatatctaaaattgaatcatatatatctctactggatgtttacaagattgtctcactt 43495854  T
Q  616 tttta 620  Q
    |||||    
T  43495855 tttta 43495859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 680 - 736
Target Start/End: Original strand, 5474777 - 5474833
Alignment:
Q  680 tataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcg 736  Q
    |||| ||||||| |||||||||||||||||||| |||| ||||||| ||||||||||    
T  5474777 tatacgtatccgttaaaatattttttaaaaatttaaacaattaattctgatacttcg 5474833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 583
Target Start/End: Original strand, 25311005 - 25311073
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacat 583  Q
    ||||||||||||| ||||| ||| |||||||||| ||||  ||||||||||||||| ||| ||||||||    
T  25311005 agtataattttaagtggttcatcaagaaacaattatactgttgcatatttaaaatttaatcatatacat 25311073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 676 - 743
Target Start/End: Original strand, 25482789 - 25482856
Alignment:
Q  676 atcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtac 743  Q
    |||| |||| ||||||||||||||||| |||||||||||||  ||||||||| ||| |||||| ||||    
T  25482789 atcacataaatatccgataaaatatttattaaaaattaaaataattaatttttatatttcgtatgtac 25482856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 515 - 653
Target Start/End: Complemental strand, 40836510 - 40836371
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| ||||| ||| |||||||||| || | |||||||| ||||||||||| ||||| || || | |  |  || ||||  ||||||||||    
T  40836510 agtataattttaagtggttcatcgagaaacaattctagtgatgcatatctaaaattgaatcatatagatctctactagatgtttacaacgttgtctcact 40836411  T
Q  615 tttttaacattcatc-ttttctatgatacgtatgtgtgaa 653  Q
    ||||||    ||||| ||||||||||||||||| ||||||    
T  40836410 tttttactcctcatctttttctatgatacgtatctgtgaa 40836371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 515 - 657
Target Start/End: Complemental strand, 48153153 - 48153010
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    |||||||||| || ||||| ||| |||||||||| || | |||||| | |||||||||||  ||||||| || |  |||  || |||| ||| |||||||    
T  48153153 agtataatttcaagtggttcatcgagaaacaattctagtgatgcatgtctaaaattgaatcgtatacatctctacggaatgtttacaacattttctcact 48153054  T
Q  615 tttttaacattcatc-ttttctatgatacgtatgtgtgaaatat 657  Q
    ||||||   |||||| ||||||| ||||||||| ||||||||||    
T  48153053 tttttattcttcatctttttctaggatacgtatatgtgaaatat 48153010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 540 - 621
Target Start/End: Complemental strand, 45492259 - 45492178
Alignment:
Q  540 gaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttttttaa 621  Q
    |||||||||  |||||||||||| ||||||||||| |||||| | ||   |||| ||| |||| ||||||||||||||||||    
T  45492259 gaaacaattcgactaatgcatatctaaaattgaatcatatacgtctctcctgaatttttacaacattgtctcacttttttaa 45492178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 515 - 619
Target Start/End: Original strand, 42040457 - 42040561
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| || || ||| ||| |||||| || | |||||||| ||||||||| | |||||||| |  | |||| ||| |||| |||||||||||    
T  42040457 agtataattttaagtgtttcatcgagagacaattctattgatgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgtctcact 42040556  T
Q  615 ttttt 619  Q
    |||||    
T  42040557 ttttt 42040561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 681 - 737
Target Start/End: Original strand, 42040637 - 42040693
Alignment:
Q  681 ataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgt 737  Q
    |||||||||||||||||||||| |||||||||||||  |  |||| |||||||||||    
T  42040637 ataagtatccgataaaatatttattaaaaattaaaataaccaattatgatacttcgt 42040693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 680 - 759
Target Start/End: Original strand, 31397369 - 31397448
Alignment:
Q  680 tataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatcc 759  Q
    ||||||||||||||||||||| | ||  |||||||||  |||||||  |||||| |||  |||| |||||||||||||||    
T  31397369 tataagtatccgataaaatatatattttaaattaaaataattaattccgatactccgtgtgtacctattcgcgagtatcc 31397448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 676 - 759
Target Start/End: Original strand, 43495927 - 43496010
Alignment:
Q  676 atcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatcc 759  Q
    ||| |||||||||||| |||||||||||||  ||||| |||  |||||||  ||||||||||| || | ||| |||||||||||    
T  43495927 atcgtataagtatccgttaaaatattttttttaaatttaaataattaattcggatacttcgtaggtgcgtatccgcgagtatcc 43496010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 555 - 653
Target Start/End: Complemental strand, 34471842 - 34471744
Alignment:
Q  555 atgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttttttaacattcatcttttctatgatacgtatgtgtgaa 653  Q
    |||||||| ||||||||||| |||||||| || | |||| ||  |||| ||||| |||||||||||   ||||| ||| ||| ||||||||| ||||||    
T  34471842 atgcatatctaaaattgaattatatacatctctactgaatttctacaacattgtgtcacttttttacacttcatatttcctaggatacgtatatgtgaa 34471744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 658 - 735
Target Start/End: Complemental strand, 45492124 - 45492047
Alignment:
Q  658 attgtgtatctatgaaacatcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttc 735  Q
    |||||||| ||||| |  |||||||||||||||||||| |||| ||||  |||||||||  |||||||  ||||||||    
T  45492124 attgtgtacctatggagtatcatataagtatccgataatatatattttttaaattaaaataattaattccgatacttc 45492047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 6e-21; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 515 - 709
Target Start/End: Original strand, 32340277 - 32340482
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||||||||| ||| | |||||||| || | |||||||| | ||||||||| |||||||| |  | |||| ||| |||| |||||||||||    
T  32340277 agtataattttaaatggttcatcgaaaaacaattctattgatgcatatatgaaattgaattatatacatctttactgaa-ttttacaacattgtctcact 32340375  T
Q  615 tttttaacattcatc-ttttctatgatacgtatgtgt-----------gaaatatattgtgtatctatgaaacatcatataagtatccgataaaatattt 702  Q
    |||||| | |||||| ||||||| ||||| ||| |||           ||| ||| |||||||||| ||||| |||| ||||||||||||||||||||||    
T  32340376 tttttacccttcatctttttctaggatacatatatgtgaagtatcttagaattatcttgtgtatctgtgaaatatcacataagtatccgataaaatattt 32340475  T
Q  703 tttaaaa 709  Q
    |||||||    
T  32340476 tttaaaa 32340482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 515 - 653
Target Start/End: Complemental strand, 8486063 - 8485926
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    |||||||||||||  |||| ||| |||||||||| |||| |||||||| ||||||||||| |||||||| | || |||| |||||||| | | ||||| |    
T  8486063 agtataattttaagcggttcatcaagaaacaattctactgatgcatatctaaaattgaatcatatacatctacactgaa-tttcacaacactatctcaat 8485965  T
Q  615 tttttaacattcatcttttctatgatacgtatgtgtgaa 653  Q
    |||||| | || || ||||||| ||||||||| ||||||    
T  8485964 tttttaccctttattttttctaggatacgtatatgtgaa 8485926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 515 - 646
Target Start/End: Original strand, 688080 - 688212
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| ||||| ||| |||||||||| || | |||||||| |||||||||||||||||||| |  | |||| ||| |||  ||||||||| |    
T  688080 agtataattttaagtggttcatcgagaaacaattatattgatgcatatctaaaattgaataatatacatctataatgaatttttacagcattgtctcatt 688179  T
Q  615 tttttaacattcatc-ttttctatgatacgtat 646  Q
    ||||||   |||||| |||||| ||||||||||    
T  688180 tttttactcttcatctttttctttgatacgtat 688212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 517 - 583
Target Start/End: Original strand, 2988131 - 2988197
Alignment:
Q  517 tataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacat 583  Q
    ||||||||||| ||||| ||| ||||||||||||| | |||||||| ||||||||||| ||||||||    
T  2988131 tataattttaagtggttcatcgagaaacaattttagtgatgcatatctaaaattgaatcatatacat 2988197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 676 - 788
Target Start/End: Original strand, 2032531 - 2032643
Alignment:
Q  676 atcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatccatataatatcggtatc 775  Q
    |||| |||| ||||||||||||||||| |||||||||||||  |||||||  ||||||||||   ||| ||| ||||||||||| |  | ||||||||||    
T  2032531 atcacataaatatccgataaaatatttattaaaaattaaaataattaattccgatacttcgtggatacgtatccgcgagtatccgtggagtatcggtatc 2032630  T
Q  776 taatacatattcg 788  Q
      |||| ||||||    
T  2032631 cgatacgtattcg 2032643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 583
Target Start/End: Complemental strand, 30928435 - 30928367
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacat 583  Q
    ||||||||||||| ||||| ||| |||||||||| ||||  ||||||| ||||||||||| ||||||||    
T  30928435 agtataattttaagtggttcatcaagaaacaattatactggtgcatatataaaattgaatcatatacat 30928367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 515 - 657
Target Start/End: Complemental strand, 10229567 - 10229424
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| ||||| ||| | |||||||| || | |||||||| || |||||||| |||||||| || || |||  ||  ||| |||||||||||    
T  10229567 agtataattttaagtggttcatcaaaaaacaattctagttatgcatatctataattgaatcatatacatctctatcgaatgtttgcaacattgtctcact 10229468  T
Q  615 tttttaacattcatc-ttttctatgatacgtatgtgtgaaatat 657  Q
    ||||||   |||||| ||||  | ||||||||| ||||||||||    
T  10229467 tttttactcttcatctttttgaaggatacgtatatgtgaaatat 10229424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 681 - 759
Target Start/End: Original strand, 688259 - 688337
Alignment:
Q  681 ataagtatccgataaaatattttttaaaaattaaaacgattaattttgatacttcgtaagtacatattcgcgagtatcc 759  Q
    ||||||||| |||||||||||| |||||||||||||  | ||||| |||||||||||   ||| ||| |||||||||||    
T  688259 ataagtatctgataaaatatttattaaaaattaaaataaataattctgatacttcgtggatacgtatccgcgagtatcc 688337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 515 - 620
Target Start/End: Original strand, 2032356 - 2032462
Alignment:
Q  515 agtataattttaaatggtttatcc-agaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcac 613  Q
    ||||||||||||| || || |||| |||||||||| || | |||||||| ||||||||| | ||||||||    | |||| ||| |||||||||||||||    
T  2032356 agtataattttaagtgtttcatccgagaaacaattctattgatgcatatctaaaattgagtcatatacatcaataatgaatttttacaatattgtctcac 2032455  T
Q  614 tttttta 620  Q
    |||||||    
T  2032456 tttttta 2032462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 676 - 734
Target Start/End: Original strand, 2988302 - 2988360
Alignment:
Q  676 atcatataagtatccgataaaatattttttaaaaattaaaacgattaattttgatactt 734  Q
    ||| |||||||||||| |||||||||||||||||||| |||  ||||||| ||||||||    
T  2988302 atcgtataagtatccgttaaaatattttttaaaaatttaaataattaattctgatactt 2988360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 517 - 642
Target Start/End: Original strand, 12312026 - 12312152
Alignment:
Q  517 tataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtc-tcactt 615  Q
    |||||||| || ||||| ||| |||||||||| || | |||||||| |||||||||||  |||||||||||| | |  |||||||| |||||| | ||||    
T  12312026 tataatttaaagtggttgatcgagaaacaattctattgatgcatatctaaaattgaattgtatacatttccacttatttttcacaacattgtctttactt 12312125  T
Q  616 ttttaacattcatcttttctatgatac 642  Q
    | ||| | ||||| ||||||| |||||    
T  12312126 tcttacccttcattttttctaggatac 12312152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 515 - 600
Target Start/End: Original strand, 12283722 - 12283807
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcac 600  Q
    |||||||||| || ||||| |||||||||||||| |||| |||||||| ||| | |||||  |||||||| ||| |||| ||||||    
T  12283722 agtataatttaaagtggttcatccagaaacaattctactgatgcatatctaatactgaattgtatacattcccactgaattttcac 12283807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 522 - 633
Target Start/End: Original strand, 6724483 - 6724595
Alignment:
Q  522 ttttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaacttt-cacaatattgtctcactttttta 620  Q
    |||||| ||||| ||| | |||||||| |||| || ||||| | ||||||||| |||||||| ||||||||| ||| ||||| |  | ||||||||||||    
T  6724483 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaaattttcacaacacagcctcactttttta 6724582  T
Q  621 acattcatctttt 633  Q
     ||||||| ||||    
T  6724583 ccattcatttttt 6724595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 539 - 781
Target Start/End: Complemental strand, 8001 - 7746
Alignment:
Q  539 agaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcacttttttaacattcatc-ttttctat 637  Q
    |||||||||| || | |||||||| ||||||||| | |||||||| |  | |||| ||| |||| |||||||||||||||||   |||||| |||||||     
T  8001 agaaacaattctattgatgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctttttctag 7902  T
Q  638 gatacgtatgtgtgaaatat------------attgtgtatctatgaaacatcatataagtatccgataaaatattttttaaaaattaaaacgattaatt 725  Q
    ||||||| | |||||| |||             |||||||||| || |  |||| |||||||| ||||||||||||| |||||||||||||  |||||||    
T  7901 gatacgtgtctgtgaagtatcttagaagtatccttgtgtatctgtggagtatcacataagtattcgataaaatatttattaaaaattaaaataattaatt 7802  T
Q  726 ttgatacttcgtaagtacatattcgcgagtatccatataatatcggtatctaatac 781  Q
      ||||||||||   ||| ||| ||||||||||| || | ||||||||||| ||||    
T  7801 ccgatacttcgtggatacgtatccgcgagtatccgtagagtatcggtatctgatac 7746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 515 - 657
Target Start/End: Complemental strand, 6282 - 6139
Alignment:
Q  515 agtataattttaaatggtttatccagaaacaattttactaatgcatatttaaaattgaataatatacatttccattgaactttcacaatattgtctcact 614  Q
    ||||||||||||| ||||| ||| | |||||||| || | |||||||| || |||||||| |||||||| || || |||  ||  ||| |||||||||||    
T  6282 agtataattttaagtggttcatcaaaaaacaattctagttatgcatatctataattgaatcatatacatctctatcgaatgtttgcaacattgtctcact 6183  T
Q  615 tttttaacattcatc-ttttctatgatacgtatgtgtgaaatat 657  Q
    ||||||   |||||| ||||  | ||||||||| ||||||||||    
T  6182 tttttactcttcatctttttgaaggatacgtatatgtgaaatat 6139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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