View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5088-Insertion-4 (Length: 749)
Name: NF5088-Insertion-4
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 551; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 7 - 573
Target Start/End: Complemental strand, 45729739 - 45729173
Alignment:
| Q |
7 |
atgcagaagcagcaaccgtggttgaaaaactaatccaatattgttttgcagaaacaccagcaggacgatcactactcgtatgcatagccaaaacaccagc |
106 |
Q |
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| T |
45729739 |
atgcagaagcagcaaccgtggttgaaaaactaatccaatattgttttgcagaaacaccagcaggacgatcactactcgtatgcatagccaaaacaccagc |
45729640 |
T |
|
| Q |
107 |
tccaaccgtaagcaaaacaatggcgtttacagtaaaagctgtaaatttctctttcacaataagaaaagcgaaaaatgcagtgaaaccaagctgagatgct |
206 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45729639 |
tccaaccgtaagcaaaacaacggcgtttacagtaaaagctgtaaatttctctttcacaataagaaaagcgaaaaacgcagtgaaaccaagctgagatgct |
45729540 |
T |
|
| Q |
207 |
attattaaggcagaagtggaaactggaagccgagcaacgccatatgcgaagagatagtcgtcaaggccggtgaggattccgatgaaggcagctgcgaaga |
306 |
Q |
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| T |
45729539 |
attattaaggcagaagtggaaactggaagccgagcaacgccatatgcgaagagatagtcgtcaaggccggtgaggattccgatgaaggcagctgcgaaga |
45729440 |
T |
|
| Q |
307 |
aaataggaggtttcatggagattatatttagtttttctggggcgatggagatggttgtcgatggtggaggatgggggtggagacggtggcgtttgatgta |
406 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
45729439 |
aaataggaggtttcatggagattatatttagtttttctggggcgatggagatggttgtcaatggtggaggatggtggtggagacggtggcgtttgatgta |
45729340 |
T |
|
| Q |
407 |
tgagattgcgaggggaatgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgttggccgccgtggatgaaatagagacgcatt |
506 |
Q |
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| T |
45729339 |
tgagattgcgaggggaatgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgttggccgccgtggatgaaatagagacgcatt |
45729240 |
T |
|
| Q |
507 |
atgaggggagcactgcaggtacctagggataatatgagacaatttactacgagaaggaatctcttca |
573 |
Q |
| |
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| T |
45729239 |
atgaggggagcactgcaggtacctagggataatatgagacaatttactacgagaaggaatctcttca |
45729173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 7 - 566
Target Start/End: Complemental strand, 45725550 - 45724991
Alignment:
| Q |
7 |
atgcagaagcagcaaccgtggttgaaaaactaatccaatattgttttgcagaaacaccagcaggacgatcactactcgtatgcatagccaaaacaccagc |
106 |
Q |
| |
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||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45725550 |
atgcagatgcagcaaccgtggttgaaaaaccaatcgcatattgttttgcagaaacaccagcaggacgatcactactcgtatgcatagccaaaacaccagc |
45725451 |
T |
|
| Q |
107 |
tccaaccgtaagcaaaacaatggcgtttacagtaaaagctgtaaatttctctttcacaataagaaaagcgaaaaatgcagtgaaaccaagctgagatgct |
206 |
Q |
| |
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||||| |||||||||| || ||||||||| ||||| ||||||||||||| |||||||| ||||||||||||||| || ||||||||||||||||||||| |
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| T |
45725450 |
accaacagtaagcaaaaaaacggcgtttacggtaaatgctgtaaatttctgtttcacaagaagaaaagcgaaaaacgcggtgaaaccaagctgagatgct |
45725351 |
T |
|
| Q |
207 |
attattaaggcagaagtggaaactggaagccgagcaacgccatatgcgaagagatagtcgtcaaggccggtgaggattccgatgaaggcagctgcgaaga |
306 |
Q |
| |
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|| ||||||| |||||||||||| |||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||| ||||| ||||| |||| |
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| T |
45725350 |
ataattaaggaagaagtggaaaccggaagccgagcaacgccatatgcgtagagataatcgtcaagaccggtgaggattccgacaaaggcggctgcaaaga |
45725251 |
T |
|
| Q |
307 |
aaataggaggtttcatggagattatatttagtttttctggggcgatggagatggttgtcgatggtggaggatgggggtggagacggtggcgtttgatgta |
406 |
Q |
| |
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||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||| | |||||| ||| | | || || ||||| |||| |||||| |
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| T |
45725250 |
aaataggtggtttcatggagattatattttgtttttctgaggcgatggagatggtgttggatggtaaaggtttgtggcggtgacggaaacgttggatgta |
45725151 |
T |
|
| Q |
407 |
tgagattgcgaggggaatgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgttggccgccgtggatgaaatagagacgcatt |
506 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45725150 |
tgagattgtgaggggaatgagcatcaaggggaaaccggcagtttccaggcaggcggagagccagacacgttggccgccgtggatgaaatagagacgcatt |
45725051 |
T |
|
| Q |
507 |
atgaggggagcactgcaggtacctagggataatatgagacaatttactacgagaaggaat |
566 |
Q |
| |
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|| |||||| ||| | || ||||||||| |||||| ||||||||||||| ||||||||| |
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| T |
45725050 |
attaggggaccaccggagttacctagggctaatatcagacaatttactatcagaaggaat |
45724991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 639 - 747
Target Start/End: Complemental strand, 45729107 - 45728994
Alignment:
| Q |
639 |
gtcactactttgatttgtgtaattgctta---ataatgaaacttaatgctcagatatgtaggggctatatatat--nnnnnnntatttatattcgccata |
733 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45729107 |
gtcactactttgatttgtgtaattgcttattaataatgaaacttaatgctcagatatgtaggggctatatatataaaaaaaaatatttatattcgccata |
45729008 |
T |
|
| Q |
734 |
ttcgttttccatgg |
747 |
Q |
| |
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|||||||||||||| |
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| T |
45729007 |
ttcgttttccatgg |
45728994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 639 - 693
Target Start/End: Complemental strand, 45724924 - 45724870
Alignment:
| Q |
639 |
gtcactactttgatttgtgtaattgcttaataatgaaacttaatgctcagatatg |
693 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
45724924 |
gtcactactttggtttgtgtgattgcttaataatgaaacttaatgctcacatatg |
45724870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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