View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5088-Insertion-5 (Length: 721)

Name: NF5088-Insertion-5
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5088-Insertion-5
NF5088-Insertion-5
[»] chr6 (32 HSPs)
chr6 (42-533)||(31289890-31290370)
chr6 (531-715)||(31290408-31290598)
chr6 (8-175)||(27421059-27421226)
chr6 (8-152)||(26632721-26632865)
chr6 (8-152)||(26738697-26738841)
chr6 (8-127)||(26652181-26652300)
chr6 (8-127)||(26758149-26758268)
chr6 (214-311)||(27420964-27421061)
chr6 (63-279)||(31394770-31394987)
chr6 (479-527)||(26952498-26952546)
chr6 (479-527)||(26961991-26962039)
chr6 (479-527)||(26980289-26980337)
chr6 (640-705)||(2820373-2820438)
chr6 (479-516)||(26649356-26649393)
chr6 (479-516)||(26755324-26755361)
chr6 (531-576)||(27608250-27608295)
chr6 (531-576)||(27715637-27715682)
chr6 (621-693)||(5970098-5970170)
chr6 (621-693)||(15443692-15443764)
chr6 (531-578)||(26058891-26058938)
chr6 (531-578)||(26078861-26078908)
chr6 (620-691)||(32313403-32313474)
chr6 (620-678)||(8931591-8931649)
chr6 (621-679)||(9195744-9195802)
chr6 (621-679)||(9617445-9617503)
chr6 (621-679)||(16766708-16766766)
chr6 (633-682)||(10335378-10335427)
chr6 (621-690)||(25038061-25038130)
chr6 (621-678)||(26562701-26562758)
chr6 (532-565)||(26876539-26876572)
chr6 (637-682)||(29449689-29449734)
chr6 (639-692)||(34625732-34625785)
[»] scaffold0003 (2 HSPs)
scaffold0003 (8-175)||(66137-66304)
scaffold0003 (214-311)||(66302-66399)
[»] chr1 (12 HSPs)
chr1 (572-703)||(264591-264724)
chr1 (621-679)||(44482241-44482299)
chr1 (633-693)||(14332406-14332465)
chr1 (643-687)||(23605132-23605176)
chr1 (648-691)||(17080898-17080941)
chr1 (621-691)||(5376490-5376560)
chr1 (627-689)||(6427351-6427413)
chr1 (360-390)||(18008612-18008642)
chr1 (621-679)||(25361897-25361955)
chr1 (625-679)||(34712377-34712431)
chr1 (638-684)||(43609825-43609871)
chr1 (648-693)||(21057780-21057825)
[»] scaffold0022 (1 HSPs)
scaffold0022 (627-694)||(99889-99956)
[»] chr5 (11 HSPs)
chr5 (621-679)||(22423802-22423860)
chr5 (626-684)||(4991372-4991429)
chr5 (625-694)||(38749557-38749626)
chr5 (627-670)||(16374338-16374381)
chr5 (621-691)||(3966502-3966572)
chr5 (621-691)||(18592072-18592142)
chr5 (621-679)||(21522761-21522819)
chr5 (621-679)||(21533327-21533385)
chr5 (627-689)||(43208270-43208332)
chr5 (628-689)||(36838544-36838605)
chr5 (625-678)||(41558648-41558701)
[»] chr3 (7 HSPs)
chr3 (577-682)||(45382751-45382858)
chr3 (620-691)||(16192739-16192810)
chr3 (621-689)||(8039825-8039893)
chr3 (643-694)||(19323460-19323511)
chr3 (635-690)||(28576716-28576771)
chr3 (631-693)||(35990525-35990587)
chr3 (625-690)||(3185242-3185306)
[»] chr7 (9 HSPs)
chr7 (621-679)||(6028636-6028694)
chr7 (626-679)||(7328686-7328739)
chr7 (618-679)||(7438717-7438778)
chr7 (625-688)||(31808503-31808566)
chr7 (635-682)||(43160492-43160539)
chr7 (625-679)||(17307904-17307958)
chr7 (621-679)||(24339653-24339711)
chr7 (625-690)||(16341496-16341561)
chr7 (622-691)||(32308119-32308188)
[»] chr2 (2 HSPs)
chr2 (633-679)||(44605141-44605187)
chr2 (631-693)||(31026692-31026754)
[»] scaffold0349 (1 HSPs)
scaffold0349 (531-576)||(16263-16308)
[»] chr8 (6 HSPs)
chr8 (631-690)||(12985392-12985451)
chr8 (621-679)||(22651987-22652045)
chr8 (531-569)||(29270983-29271021)
chr8 (621-679)||(29447100-29447158)
chr8 (628-682)||(31681827-31681881)
chr8 (627-692)||(31548289-31548354)
[»] chr4 (6 HSPs)
chr4 (620-679)||(24613690-24613749)
chr4 (621-691)||(35723374-35723445)
chr4 (643-694)||(44796974-44797025)
chr4 (666-704)||(18727855-18727893)
chr4 (618-679)||(4383379-4383439)
chr4 (625-690)||(18513235-18513300)


Alignment Details
Target: chr6 (Bit Score: 438; Significance: 0; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 42 - 533
Target Start/End: Original strand, 31289890 - 31290370
Alignment:
Q  42 tcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccgaccttcagcttcaatatccctaatttctgcatcgt 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31289890 tcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccgaccttcagcttcaatatccctaatttctgcatcgt 31289989  T
Q  142 aatctttgatcccgtcggtgatgagtgctgatttcgttccctggcggcgatttccggcaattgctgtcacactttttctcctctgttgctaccaatggat 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31289990 aatctttgatcccgtcggtgatgagtgctgatttcgttccctggcggcgatttccggaaattgctgtcacactttttctcctctgttgctaccaatggat 31290089  T
Q  242 agaggaaattttggggtgttcagcttcttgtctctggcgttggatttgagtgacattaatagcattctttctcttcaatggagactattacaccgtgaac 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |    
T  31290090 agaggaaattttggggtgttcagcttcttgtctctggcgttggatttgagtgacattaatagcattctttctcttctatggagactattacaccatgagc 31290189  T
Q  342 aaaatgaggatattatatagcttagatagataacttgtagtacaagttatcttagtgtagtactatagagtagtacattctattttactagtacttgtat 441  Q
    ||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31290190 aaaatgaggatattatatagcttaga-----------tagtacaagttatcttagtgtagtactatagagtagtacattctattttactagtacttgtat 31290278  T
Q  442 gctcactatataagctaattttgctcatggtgtaattttgagtcaggttagttgttgttttatcttgcaatatatagtgtttgatactgaca 533  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31290279 gctcactatataagctaattttgctcatggtgtaattttgagtcaggttagttgttgttttatcttgcaatatatagtgtttgatactgaca 31290370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 531 - 715
Target Start/End: Original strand, 31290408 - 31290598
Alignment:
Q  531 acagaaactacatgaggctggaggcacctatattcaattcccaaacacttctcattgaaggcgtgtctggtgtccaacatgtgtgtatttgacaccgaca 630  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31290408 acagaaactacatgaggctcgaggcacctgtattcaattcccaaacacttctcattgaaggcgtgtctggtgtccaacatgtgtgtatttgacaccgaca 31290507  T
Q  631 cgacaccgacatatgtaat------tacattcatttatgttattttctcaaattactatcggtgtcgacaaatcaatgtcaatgttaattt 715  Q
     ||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31290508 tgacaccgacatatgtaattacgtatacattcatttatgttattttctcaaattactatcggtgtcgacgaatcaatgtcaatgttaattt 31290598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 27421226 - 27421059
Alignment:
Q  8 ctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccga 107  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||  |  |||  ||||||||| || |||  |||||||||||||||||||    
T  27421226 ctatggacattccttgacacgatccctcaaactttcaatcccggtcaaatgttcacctttctgctcactgacacaatggcagaaacatcacaacacccga 27421127  T
Q  108 ccttcagcttcaatatccctaatttctgcatcgtaatctttgatcccgtcggtgatgagtgctgattt 175  Q
    ||||||||||||||||||||  |||||||||| | || ||| |||||  |||||||||||||||||||    
T  27421126 ccttcagcttcaatatccctggtttctgcatcatcatattttatcccagcggtgatgagtgctgattt 27421059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 26632721 - 26632865
Alignment:
Q  8 ctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccga 107  Q
    |||||||||||||||||| | |||||| |||| ||  ||||||||||||| || | ||||||  ||||||| ||||||||||||||||||||||||||||    
T  26632721 ctatggacattccttgacccaatcccttaaacatttcatcccggtcaaatcttcgtagttccgttcactgatgcagtggtggaaacatcacaacacccga 26632820  T
Q  108 ccttcagcttcaatatccctaatttctgcatcgtaatctttgatc 152  Q
    |||||||||||| |||||||  | |||||||| ||||||||||||    
T  26632821 ccttcagcttcagtatccctggtatctgcatcctaatctttgatc 26632865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 26738697 - 26738841
Alignment:
Q  8 ctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccga 107  Q
    |||||||||||||||||| | |||||| |||| ||  ||||||||||||| || | ||||||  ||||||| ||||||||||||||||||||||||||||    
T  26738697 ctatggacattccttgacccaatcccttaaacatttcatcccggtcaaatcttcgtagttccgttcactgatgcagtggtggaaacatcacaacacccga 26738796  T
Q  108 ccttcagcttcaatatccctaatttctgcatcgtaatctttgatc 152  Q
    |||||||||||| |||||||  | |||||||| ||||||||||||    
T  26738797 ccttcagcttcagtatccctggtatctgcatcctaatctttgatc 26738841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 26652181 - 26652300
Alignment:
Q  8 ctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccga 107  Q
    ||||||||||||||||| | ||||||||||||||| |||| | |||||||||| |||||||| |||| ||||||| |||  ||||||||||| |||||||    
T  26652181 ctatggacattccttgatgtgatccctcaaacttttgatctcagtcaaatgttcgcagttccgctcaatgacgcattggcagaaacatcacatcacccga 26652280  T
Q  108 ccttcagcttcaatatccct 127  Q
    ||||||||||||||||||||    
T  26652281 ccttcagcttcaatatccct 26652300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 26758149 - 26758268
Alignment:
Q  8 ctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccga 107  Q
    ||||||||||||||||| | ||||||||||||||| |||| | |||||||||| |||||||| |||| ||||||| |||  ||||||||||| |||||||    
T  26758149 ctatggacattccttgatgtgatccctcaaacttttgatctcagtcaaatgttcgcagttccgctcaatgacgcattggcagaaacatcacatcacccga 26758248  T
Q  108 ccttcagcttcaatatccct 127  Q
    ||||||||||||||||||||    
T  26758249 ccttcagcttcaatatccct 26758268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 214 - 311
Target Start/End: Complemental strand, 27421061 - 27420964
Alignment:
Q  214 tttttctcctctgttgctaccaatggatagaggaaattttggggtgttcagcttcttgtctctggcgttggatttgagtgacattaatagcattcttt 311  Q
    |||||||||||||| ||||||||  ||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||  |||||| |||||    
T  27421061 tttttctcctctgtggctaccaactgatagagaaaattttagggttttcagcttcttgtctctggcgttggatttgagtgacatccatagcactcttt 27420964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 279
Target Start/End: Original strand, 31394770 - 31394987
Alignment:
Q  63 cagttccactcactgacgcagtggtgg-aaacatcacaacacccgaccttcagcttcaatatccctaatttctgcatcgtaatctttgatcccgtcggtg 161  Q
    ||||||| | ||||| ||||||||||| |||| |||||||||| |||||||||||||||||| | |  ||| |||||| | |||||| ||||   ||||     
T  31394770 cagttccccgcactgtcgcagtggtggtaaacgtcacaacacctgaccttcagcttcaatatacatggtttttgcatcatcatctttaatccatgcggtt 31394869  T
Q  162 atgagtgctgatttcgttccctggcggcgatttccggcaattgctgtcacactttttctcctctgttgctaccaatggatagaggaaattttggggtgtt 261  Q
    ||||  || |||||||||    |||||| ||||| |   ||| |||||||| |||||||||||| |||||  || ||||||||| |||  ||||||| |     
T  31394870 atgaacgcagatttcgttattgggcggcaatttctgatcatttctgtcacagtttttctcctctattgctggcattggatagagcaaaacttggggtttg 31394969  T
Q  262 cagcttcttgtctctggc 279  Q
     | |||||||||||||||    
T  31394970 aatcttcttgtctctggc 31394987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 479 - 527
Target Start/End: Original strand, 26952498 - 26952546
Alignment:
Q  479 ttgagtcaggttagttgttgttttatcttgcaatatatagtgtttgata 527  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||    
T  26952498 ttgagtcaggtttgttgttgttttatcttgcaatatatagtatttgata 26952546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 479 - 527
Target Start/End: Original strand, 26961991 - 26962039
Alignment:
Q  479 ttgagtcaggttagttgttgttttatcttgcaatatatagtgtttgata 527  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||    
T  26961991 ttgagtcaggtttgttgttgttttatcttgcaatatatagtatttgata 26962039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 479 - 527
Target Start/End: Original strand, 26980289 - 26980337
Alignment:
Q  479 ttgagtcaggttagttgttgttttatcttgcaatatatagtgtttgata 527  Q
    |||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  26980289 ttgagtcaggtttgttgttgttttattttgcaatatatagtatttgata 26980337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 640 - 705
Target Start/End: Original strand, 2820373 - 2820438
Alignment:
Q  640 catatgtaattacattcatttatgttattttctcaaattactatcggtgtcgacaaatcaatgtca 705  Q
    ||||||| ||||||||||||||| |||||||||||||||| ||| ||| |  ||| ||||||||||    
T  2820373 catatgtgattacattcatttattttattttctcaaattattattggtatttacatatcaatgtca 2820438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 479 - 516
Target Start/End: Original strand, 26649356 - 26649393
Alignment:
Q  479 ttgagtcaggttagttgttgttttatcttgcaatatat 516  Q
    |||||||||||| |||||||||||||||||||||||||    
T  26649356 ttgagtcaggttcgttgttgttttatcttgcaatatat 26649393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 479 - 516
Target Start/End: Original strand, 26755324 - 26755361
Alignment:
Q  479 ttgagtcaggttagttgttgttttatcttgcaatatat 516  Q
    |||||||||||| |||||||||||||||||||||||||    
T  26755324 ttgagtcaggttcgttgttgttttatcttgcaatatat 26755361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 531 - 576
Target Start/End: Complemental strand, 27608295 - 27608250
Alignment:
Q  531 acagaaactacatgaggctggaggcacctatattcaattcccaaac 576  Q
    |||||||||||||||||||||| |||||||| || |||||||||||    
T  27608295 acagaaactacatgaggctggatgcacctattttgaattcccaaac 27608250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 531 - 576
Target Start/End: Complemental strand, 27715682 - 27715637
Alignment:
Q  531 acagaaactacatgaggctggaggcacctatattcaattcccaaac 576  Q
    ||||||||||||| |||||||| ||||||||||| |||||||||||    
T  27715682 acagaaactacatcaggctggatgcacctatattaaattcccaaac 27715637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 621 - 693
Target Start/End: Original strand, 5970098 - 5970170
Alignment:
Q  621 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 693  Q
    ||||||||||||||||| |||| |||||||||| | | |||||| ||||| |||||||| || | ||||||||    
T  5970098 gacaccgacacgacacccacatttgtaattacactgaattatgtgattttttcaaattattaactgtgtcgac 5970170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 621 - 693
Target Start/End: Complemental strand, 15443764 - 15443692
Alignment:
Q  621 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 693  Q
    |||| |||||| ||||| |||||| |||||| ||| | ||||||||||||||||||||| ||| | |||||||    
T  15443764 gacatcgacacaacaccaacatatataattatattgaattatgttattttctcaaattattattgatgtcgac 15443692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 578
Target Start/End: Original strand, 26058891 - 26058938
Alignment:
Q  531 acagaaactacatgaggctggaggcacctatattcaattcccaaacac 578  Q
    |||||||||||||||| ||||| ||||| |||||| ||||||||||||    
T  26058891 acagaaactacatgagtctggatgcacccatattctattcccaaacac 26058938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 578
Target Start/End: Original strand, 26078861 - 26078908
Alignment:
Q  531 acagaaactacatgaggctggaggcacctatattcaattcccaaacac 578  Q
    |||||||||||||||| ||||| ||||| |||||| ||||||||||||    
T  26078861 acagaaactacatgagtctggatgcacccatattctattcccaaacac 26078908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 691
Target Start/End: Complemental strand, 32313474 - 32313403
Alignment:
Q  620 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 691  Q
    |||||||||||||||||| ||| || ||||| |||| | | ||||||||||||||| ||| ||| |||||||    
T  32313474 tgacaccgacacgacacccacacatataattgcattgaatcatgttattttctcaacttattattggtgtcg 32313403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 620 - 678
Target Start/End: Original strand, 8931591 - 8931649
Alignment:
Q  620 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatt 678  Q
    |||||||||||||||| ||||| || |||||| | | | ||||||||||||||||||||    
T  8931591 tgacaccgacacgacatcgacacatataattatactgaattatgttattttctcaaatt 8931649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 679
Target Start/End: Original strand, 9195744 - 9195802
Alignment:
Q  621 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 679  Q
    |||||| |||||||||||||| || |||||||| | | |||||| ||||||||||||||    
T  9195744 gacacctacacgacaccgacacatataattacactaaattatgtcattttctcaaatta 9195802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 679
Target Start/End: Complemental strand, 9617503 - 9617445
Alignment:
Q  621 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 679  Q
    |||||||  |||||||||||| || |||||||||| | |||||| ||||||||||||||    
T  9617503 gacaccgcgacgacaccgacacatataattacattgaattatgtgattttctcaaatta 9617445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 679
Target Start/End: Complemental strand, 16766766 - 16766708
Alignment:
Q  621 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 679  Q
    |||||||||||||||||||||  |||||||||| | | |||||| ||||| ||||||||    
T  16766766 gacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaatta 16766708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 682
Target Start/End: Original strand, 10335378 - 10335427
Alignment:
Q  633 acaccgacatatgtaattacattcatttatgttattttctcaaattacta 682  Q
    ||||||||| || | |||||||||| |||||| |||||||||||||||||    
T  10335378 acaccgacacatctgattacattcaattatgtcattttctcaaattacta 10335427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 690
Target Start/End: Original strand, 25038061 - 25038130
Alignment:
Q  621 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 690  Q
    |||||| |||| | |||||||| |||||||||| | | |||||| |||||||||||||| || |||||||    
T  25038061 gacaccaacacaataccgacatttgtaattacactaaattatgtaattttctcaaattattaacggtgtc 25038130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 678
Target Start/End: Complemental strand, 26562758 - 26562701
Alignment:
Q  621 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatt 678  Q
    ||||||||||||||| ||||| || |||||||| | | |||||| |||||||||||||    
T  26562758 gacaccgacacgacatcgacacatataattacactgaattatgtgattttctcaaatt 26562701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 532 - 565
Target Start/End: Original strand, 26876539 - 26876572
Alignment:
Q  532 cagaaactacatgaggctggaggcacctatattc 565  Q
    ||||||||||||||||||||| ||||||||||||    
T  26876539 cagaaactacatgaggctggatgcacctatattc 26876572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 682
Target Start/End: Complemental strand, 29449734 - 29449689
Alignment:
Q  637 cgacatatgtaattacattcatttatgttattttctcaaattacta 682  Q
    ||||| |||| |||||||||| |||||||||||||| |||||||||    
T  29449734 cgacacatgtgattacattcaattatgttattttctgaaattacta 29449689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 692
Target Start/End: Complemental strand, 34625785 - 34625732
Alignment:
Q  639 acatatgtaattacattcatttatgttattttctcaaattactatcggtgtcga 692  Q
    |||||||| |||||||||| |||  | |||||||||||||| ||||||||||||    
T  34625785 acatatgtgattacattcaattaattcattttctcaaattattatcggtgtcga 34625732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 88; Significance: 6e-42; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 66137 - 66304
Alignment:
Q  8 ctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccga 107  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||  |  |||  ||||||||| || |||  |||||||||||||||||||    
T  66137 ctatggacattccttgacacgatccctcaaactttcaatcccggtcaaatgttcacctttctgctcactgacacaatggcagaaacatcacaacacccga 66236  T
Q  108 ccttcagcttcaatatccctaatttctgcatcgtaatctttgatcccgtcggtgatgagtgctgattt 175  Q
    ||||||||||||||||||||  |||||||||| | || ||| |||||  |||||||||||||||||||    
T  66237 ccttcagcttcaatatccctggtttctgcatcatcatattttatcccagcggtgatgagtgctgattt 66304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 214 - 311
Target Start/End: Original strand, 66302 - 66399
Alignment:
Q  214 tttttctcctctgttgctaccaatggatagaggaaattttggggtgttcagcttcttgtctctggcgttggatttgagtgacattaatagcattcttt 311  Q
    |||||||||||||| ||||||||  ||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||  |||||| |||||    
T  66302 tttttctcctctgtggctaccaactgatagagaaaattttagggttttcagcttcttgtctctggcgttggatttgagtgacatccatagcactcttt 66399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 572 - 703
Target Start/End: Complemental strand, 264724 - 264591
Alignment:
Q  572 caaacacttctcattgaaggcgtgtctggtgtccaacatgtgt--gtatttgacaccgacacgacaccgacatatgtaattacattcatttatgttattt 669  Q
    |||||||||||||| || |||||||| |||| ||||||| |||  || || ||||| ||||||||||| ||| |||| |||||||| |  ||||||| ||    
T  264724 caaacacttctcatagatggcgtgtcaggtgcccaacatatgtttgtgttcgacactgacacgacaccaacacatgtgattacatttaagtatgttactt 264625  T
Q  670 tctcaaattactatcggtgtcgacaaatcaatgt 703  Q
    ||| |||||| ||| |||| ||||||||||||||    
T  264624 tcttaaattaatattggtgacgacaaatcaatgt 264591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 621 - 679
Target Start/End: Complemental strand, 44482299 - 44482241
Alignment:
Q  621 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 679  Q
    ||||||||||||||||||||| || |||||||| | | |||||| ||||||||||||||    
T  44482299 gacaccgacacgacaccgacacatataattacactgaattatgtgattttctcaaatta 44482241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 633 - 693
Target Start/End: Complemental strand, 14332465 - 14332406
Alignment:
Q  633 acaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 693  Q
    |||||||||||||| |||||||| | |||||| |||||||||||||  |||||||||||||    
T  14332465 acaccgacatatgtgattacattgaattatgtcattttctcaaatt-ttatcggtgtcgac 14332406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 643 - 687
Target Start/End: Original strand, 23605132 - 23605176
Alignment:
Q  643 atgtaattacattcatttatgttattttctcaaattactatcggt 687  Q
    |||| |||||||||| || ||||||||||||||||||||||||||    
T  23605132 atgtgattacattcaattttgttattttctcaaattactatcggt 23605176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 691
Target Start/End: Original strand, 17080898 - 17080941
Alignment:
Q  648 attacattcatttatgttattttctcaaattactatcggtgtcg 691  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||    
T  17080898 attacattcaattatgttattttctcaaattattattggtgtcg 17080941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 691
Target Start/End: Original strand, 5376490 - 5376560
Alignment:
Q  621 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 691  Q
    |||| ||||||||||||||||  | |||||||| | | |||||||||||||| |||||| || ||||||||    
T  5376490 gacatcgacacgacaccgacacttttaattacactgaattatgttattttcttaaattattagcggtgtcg 5376560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 627 - 689
Target Start/End: Complemental strand, 6427413 - 6427351
Alignment:
Q  627 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 689  Q
    ||||||||||| ||| || |||||||||| | |||||| |||||||||||||| || ||||||    
T  6427413 gacacgacaccaacacatataattacattgaattatgtgattttctcaaattattagcggtgt 6427351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 360 - 390
Target Start/End: Original strand, 18008612 - 18008642
Alignment:
Q  360 agcttagatagataacttgtagtacaagtta 390  Q
    |||||||||||||||||||||||||||||||    
T  18008612 agcttagatagataacttgtagtacaagtta 18008642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 679
Target Start/End: Complemental strand, 25361955 - 25361897
Alignment:
Q  621 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 679  Q
    |||||||||||||||| |||| || |||||||| | | |||||| ||||||||||||||    
T  25361955 gacaccgacacgacactgacacatataattacactgaattatgtgattttctcaaatta 25361897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 625 - 679
Target Start/End: Original strand, 34712377 - 34712431
Alignment:
Q  625 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 679  Q
    |||||||||||| |||| || |||||||| | | |||||||||||||||||||||    
T  34712377 ccgacacgacactgacacatataattacactaaattatgttattttctcaaatta 34712431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 638 - 684
Target Start/End: Original strand, 43609825 - 43609871
Alignment:
Q  638 gacatatgtaattacattcatttatgttattttctcaaattactatc 684  Q
    |||| |||| |||||||||| ||||||||||||||||||||| ||||    
T  43609825 gacacatgtgattacattcaattatgttattttctcaaattattatc 43609871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 693
Target Start/End: Complemental strand, 21057825 - 21057780
Alignment:
Q  648 attacattcatttatgttattttctcaaattactatcggtgtcgac 693  Q
    |||||||||| |||||||||||||| |||||| || ||||||||||    
T  21057825 attacattcaattatgttattttctaaaattattagcggtgtcgac 21057780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 627 - 694
Target Start/End: Complemental strand, 99956 - 99889
Alignment:
Q  627 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 694  Q
    ||||||||||| ||| || |||||||||| | |||||||||||||| |||||| ||||||||||||||    
T  99956 gacacgacaccaacacatataattacattgaattatgttattttctaaaattattatcggtgtcgaca 99889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 621 - 679
Target Start/End: Original strand, 22423802 - 22423860
Alignment:
Q  621 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 679  Q
    |||||||||||||||||||||||| |||||| ||| | |||||| ||||||||||||||    
T  22423802 gacaccgacacgacaccgacatatataattatattgaattatgtgattttctcaaatta 22423860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 626 - 684
Target Start/End: Original strand, 4991372 - 4991429
Alignment:
Q  626 cgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatc 684  Q
    |||||||||||||||| || |||||||||  |||||||| |||||||||||||||||||    
T  4991372 cgacacgacaccgacacatctaattacatg-atttatgtcattttctcaaattactatc 4991429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 625 - 694
Target Start/End: Original strand, 38749557 - 38749626
Alignment:
Q  625 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 694  Q
    ||||||| ||||| ||| || |||||||||| | |||||| ||||| |||||||| ||||||||||||||    
T  38749557 ccgacacaacaccaacacatataattacattgaattatgtcattttttcaaattattatcggtgtcgaca 38749626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 627 - 670
Target Start/End: Original strand, 16374338 - 16374381
Alignment:
Q  627 gacacgacaccgacatatgtaattacattcatttatgttatttt 670  Q
    ||||||||||||||| ||||||||||| | ||||||||||||||    
T  16374338 gacacgacaccgacacatgtaattacactgatttatgttatttt 16374381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 691
Target Start/End: Complemental strand, 3966572 - 3966502
Alignment:
Q  621 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 691  Q
    ||||| ||||||||||||||| || |||||||| | | || ||| |||||||||||||| || ||||||||    
T  3966572 gacactgacacgacaccgacacatataattacactgaattgtgtgattttctcaaattattagcggtgtcg 3966502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 691
Target Start/End: Complemental strand, 18592142 - 18592072
Alignment:
Q  621 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 691  Q
    |||||||||||||||||| || || |||||||||| | |||||| ||||||| ||| || || ||||||||    
T  18592142 gacaccgacacgacaccggcacatataattacattgaattatgtaattttcttaaaatattagcggtgtcg 18592072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 679
Target Start/End: Complemental strand, 21522819 - 21522761
Alignment:
Q  621 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 679  Q
    |||||||||||||||||||||  |||||||||| | | |||||||||||| | ||||||    
T  21522819 gacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaatta 21522761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 679
Target Start/End: Complemental strand, 21533385 - 21533327
Alignment:
Q  621 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 679  Q
    |||||||||||||||||||||  |||||||||| | | |||||||||||| | ||||||    
T  21533385 gacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaatta 21533327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 627 - 689
Target Start/End: Original strand, 43208270 - 43208332
Alignment:
Q  627 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 689  Q
    ||||| |||| |||| || | |||||||| | |||||| ||||||||||||||||||||||||    
T  43208270 gacacaacacagacagatatgattacattgaattatgtcattttctcaaattactatcggtgt 43208332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 628 - 689
Target Start/End: Complemental strand, 36838605 - 36838544
Alignment:
Q  628 acacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 689  Q
    |||||||||||||| || |||||||| | | |||||| |||||||||||||| || ||||||    
T  36838605 acacgacaccgacacatataattacactaaattatgtaattttctcaaattattagcggtgt 36838544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 625 - 678
Target Start/End: Original strand, 41558648 - 41558701
Alignment:
Q  625 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatt 678  Q
    |||||||||||| |||| || |||||||||| | |||||| |||||||||||||    
T  41558648 ccgacacgacactgacacatttaattacattgaattatgtcattttctcaaatt 41558701  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 577 - 682
Target Start/End: Complemental strand, 45382858 - 45382751
Alignment:
Q  577 acttctcattgaaggcgtgtctggtgtccaacatgtgt--gtatttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctca 674  Q
    |||||| || |||||| |||| ||||||| |||| |||  || | ||||||| ||| | ||||||||||||| ||||||||||  ||||||||||||| |    
T  45382858 acttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgacaccaacatgtcaccgacatatgtgattacattcaaatatgttattttctta 45382759  T
Q  675 aattacta 682  Q
    ||||||||    
T  45382758 aattacta 45382751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 620 - 691
Target Start/End: Original strand, 16192739 - 16192810
Alignment:
Q  620 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 691  Q
    |||||||||||||||| | ||| || |||||||| | | ||||||||||||||||||||| || ||||||||    
T  16192739 tgacaccgacacgacatcaacacatataattacactgaattatgttattttctcaaattattaacggtgtcg 16192810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 621 - 689
Target Start/End: Original strand, 8039825 - 8039893
Alignment:
Q  621 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 689  Q
    ||||||||||||||||||||| || |||||||| | | |||| | |||||||||||||| || ||||||    
T  8039825 gacaccgacacgacaccgacacatataattacactgaattatataattttctcaaattattagcggtgt 8039893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 643 - 694
Target Start/End: Original strand, 19323460 - 19323511
Alignment:
Q  643 atgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 694  Q
    |||| |||| ||||| |||||| ||||||||||||||||||| |||||||||    
T  19323460 atgtgattaaattcaattatgtcattttctcaaattactatcagtgtcgaca 19323511  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 690
Target Start/End: Complemental strand, 28576771 - 28576716
Alignment:
Q  635 accgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 690  Q
    ||||||| ||||||||||||||| || ||| |||||||||||||| || |||||||    
T  28576771 accgacacatgtaattacattcaattttgtcattttctcaaattattaccggtgtc 28576716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 631 - 693
Target Start/End: Original strand, 35990525 - 35990587
Alignment:
Q  631 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 693  Q
    |||||| |||| ||||  ||||||||| |||| |||||||||||||||| |||| ||||||||    
T  35990525 cgacactgacacatgtggttacattcagttattttattttctcaaattattatcagtgtcgac 35990587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 625 - 690
Target Start/End: Original strand, 3185242 - 3185306
Alignment:
Q  625 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 690  Q
    |||||||||||| |||| ||||||||||||||| ||||| ||| |||| |||||| ||||| ||||    
T  3185242 ccgacacgacactgacacatgtaattacattcaattatg-tatcttctgaaattattatcgatgtc 3185306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 621 - 679
Target Start/End: Complemental strand, 6028694 - 6028636
Alignment:
Q  621 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 679  Q
    ||||| |||||||||||||||| |||||||||||| | ||||||||| || ||||||||    
T  6028694 gacactgacacgacaccgacatttgtaattacattaaattatgttatattttcaaatta 6028636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 626 - 679
Target Start/End: Original strand, 7328686 - 7328739
Alignment:
Q  626 cgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 679  Q
    |||||||||||||||| || |||||||| | | |||||||||||||||||||||    
T  7328686 cgacacgacaccgacacatataattacactaaattatgttattttctcaaatta 7328739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 618 - 679
Target Start/End: Complemental strand, 7438778 - 7438717
Alignment:
Q  618 tttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 679  Q
    ||||||||||||| ||||||||||  |||||||||||| | |||||| ||||| ||||||||    
T  7438778 tttgacaccgacatgacaccgacacttgtaattacattgaattatgtgattttttcaaatta 7438717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 688
Target Start/End: Original strand, 31808503 - 31808566
Alignment:
Q  625 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtg 688  Q
    ||||||||||||| ||| |||| |||||||| | || ||| |||||||||||||| ||||||||    
T  31808503 ccgacacgacaccaacacatgtgattacattgacttgtgtcattttctcaaattattatcggtg 31808566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 682
Target Start/End: Complemental strand, 43160539 - 43160492
Alignment:
Q  635 accgacatatgtaattacattcatttatgttattttctcaaattacta 682  Q
    ||||||| |||| |||||||||| |||||||||||||| |||||||||    
T  43160539 accgacacatgtgattacattcaattatgttattttcttaaattacta 43160492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 625 - 679
Target Start/End: Complemental strand, 17307958 - 17307904
Alignment:
Q  625 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 679  Q
    ||||||||||||| ||| || |||||||| | | |||||||||||||||||||||    
T  17307958 ccgacacgacaccaacacatataattacactgaattatgttattttctcaaatta 17307904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 679
Target Start/End: Complemental strand, 24339711 - 24339653
Alignment:
Q  621 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 679  Q
    |||||||||||||||||||||  |||||||||| | | |||||| ||||| ||||||||    
T  24339711 gacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaatta 24339653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 625 - 690
Target Start/End: Complemental strand, 16341561 - 16341496
Alignment:
Q  625 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 690  Q
    |||||||||||||| || || |||||||| | | |||||| |||||||||||||| |||| |||||    
T  16341561 ccgacacgacaccggcacatataattacacttaattatgtgattttctcaaattattatcagtgtc 16341496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 691
Target Start/End: Complemental strand, 32308188 - 32308119
Alignment:
Q  622 acaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 691  Q
    ||||||||||||||| |||| ||  ||||||| | | |||||| |||||||||||||| || ||||||||    
T  32308188 acaccgacacgacactgacacatacaattacactgaattatgtgattttctcaaattattagcggtgtcg 32308119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 633 - 679
Target Start/End: Original strand, 44605141 - 44605187
Alignment:
Q  633 acaccgacatatgtaattacattcatttatgttattttctcaaatta 679  Q
    ||||||||| ||||||||||||| | |||||||||||||||||||||    
T  44605141 acaccgacacatgtaattacattgaattatgttattttctcaaatta 44605187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 631 - 693
Target Start/End: Complemental strand, 31026754 - 31026692
Alignment:
Q  631 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 693  Q
    |||||||||||||| | |||||||| | |||||| ||||||| |||||| ||||||| |||||    
T  31026754 cgacaccgacatatatgattacattgaattatgtcattttcttaaattattatcggtctcgac 31026692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 531 - 576
Target Start/End: Original strand, 16263 - 16308
Alignment:
Q  531 acagaaactacatgaggctggaggcacctatattcaattcccaaac 576  Q
    ||||||||||||| |||||||| ||||||||||| |||||||||||    
T  16263 acagaaactacatcaggctggatgcacctatattaaattcccaaac 16308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 690
Target Start/End: Complemental strand, 12985451 - 12985392
Alignment:
Q  631 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 690  Q
    |||||||||||||| | |||||||| | |||||| |||||||||||||| ||| ||||||    
T  12985451 cgacaccgacatatatgattacattgaattatgtgattttctcaaattattataggtgtc 12985392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 679
Target Start/End: Complemental strand, 22652045 - 22651987
Alignment:
Q  621 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 679  Q
    |||||||||||||||||||||  |||||||| ||| | |||||| ||||| ||||||||    
T  22652045 gacaccgacacgacaccgacacttgtaattatattgaattatgtgattttttcaaatta 22651987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 531 - 569
Target Start/End: Complemental strand, 29271021 - 29270983
Alignment:
Q  531 acagaaactacatgaggctggaggcacctatattcaatt 569  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  29271021 acagaaactacatgagactggatgcacctatattcaatt 29270983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 679
Target Start/End: Original strand, 29447100 - 29447158
Alignment:
Q  621 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 679  Q
    |||||||||| ||||||||||  |||| ||||||| | |||||| ||||||||||||||    
T  29447100 gacaccgacatgacaccgacacttgtagttacattgaattatgtgattttctcaaatta 29447158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 628 - 682
Target Start/End: Original strand, 31681827 - 31681881
Alignment:
Q  628 acacgacaccgacatatgtaattacattcatttatgttattttctcaaattacta 682  Q
    |||||||||||||| |||| ||| |||||| |||||| ||||||| |||||||||    
T  31681827 acacgacaccgacacatgtgatttcattcaattatgtcattttcttaaattacta 31681881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 692
Target Start/End: Original strand, 31548289 - 31548354
Alignment:
Q  627 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcga 692  Q
    |||| |||||||||| |||| |||||||| | |||||| ||||| |||||| | ||||||||||||    
T  31548289 gacatgacaccgacacatgtgattacattgaattatgtcattttatcaaataattatcggtgtcga 31548354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 679
Target Start/End: Original strand, 24613690 - 24613749
Alignment:
Q  620 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 679  Q
    ||||||||||| ||||||||||  |||| ||||||| | |||||| ||||||||||||||    
T  24613690 tgacaccgacatgacaccgacacttgtacttacattgaattatgtgattttctcaaatta 24613749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 621 - 691
Target Start/End: Original strand, 35723374 - 35723445
Alignment:
Q  621 gacaccgacacgacaccgacatatgtaattacattcatttatgt-tattttctcaaattactatcggtgtcg 691  Q
    |||||||| ||||||| |||| || |||||||||| | |||||| ||||||||||||||| || ||||||||    
T  35723374 gacaccgatacgacactgacacatataattacattgaattatgtgtattttctcaaattattagcggtgtcg 35723445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 643 - 694
Target Start/End: Original strand, 44796974 - 44797025
Alignment:
Q  643 atgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 694  Q
    ||||||||||||| | ||||||||||||||||||||| | ||||||| ||||    
T  44796974 atgtaattacattgaattatgttattttctcaaattattgtcggtgttgaca 44797025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 666 - 704
Target Start/End: Complemental strand, 18727893 - 18727855
Alignment:
Q  666 attttctcaaattactatcggtgtcgacaaatcaatgtc 704  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  18727893 attttctcaaattactattggtgttgacaaatcaatgtc 18727855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 618 - 679
Target Start/End: Complemental strand, 4383439 - 4383379
Alignment:
Q  618 tttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 679  Q
    ||||||||||||||||||| ||||| |||||||||| | | |||||| ||||| ||||||||    
T  4383439 tttgacaccgacacgacactgacatttgtaattacactgaattatgtgatttt-tcaaatta 4383379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 625 - 690
Target Start/End: Original strand, 18513235 - 18513300
Alignment:
Q  625 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 690  Q
    ||||||| |||| |||| || | |||||||| | |||||| |||||||||||||| ||||||||||    
T  18513235 ccgacacaacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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