View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5088-Insertion-6 (Length: 718)
Name: NF5088-Insertion-6
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088-Insertion-6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 667; Significance: 0; HSPs: 14)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 8 - 714
Target Start/End: Original strand, 14507040 - 14507744
Alignment:
| Q |
8 |
gactcaaacattgtaagattgcttcggagcaggagtccgatattctattcagatccaggagacatgctgaaattggtggaggaattaaaggttttgggtt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14507040 |
gactcaaacattgtaagattgcttcggagccggagtccgatattctattcagatccaggagacatgctgaaattggtggaggaattaaaggttttgggtt |
14507139 |
T |
|
| Q |
108 |
ttaatccttcaaaaacatctttcaatctagcactagttgccaaagcaactataaacaaaaccctatggaaagataaagttgacacctttaagaaatgggg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14507140 |
ttaatccttcaaaaacatctttcaatctagcactaattgccaaagcaactataaacaaaaccctatggaaagataaagttgacacctttaagaaatgggg |
14507239 |
T |
|
| Q |
208 |
ttggtctgaacaagttattttcgaagcatttagaaggcggcctgagtgtatgttagtatccattaataaattaaatttagtgatgaatttttgggttaat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14507240 |
ttggtctgaacaagttattttcgaagcatttagaaggcggcctgagtgtatgttagtatccattaataaattaaatttagtgatgaatttttgggttaat |
14507339 |
T |
|
| Q |
308 |
gagttgggttgggatgctcttgcccttgccttagatccatcagtttttggtataagtttcgaaaaaaggaccattccaagggccccaattgtgcaattcc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14507340 |
gagttgggttgggatgctcttgcccttgccttagatccatcagtttttggtataagtttcgaaaaaaggaccattccaagggccccaattgtgcaattcc |
14507439 |
T |
|
| Q |
408 |
tgctaaagaaaggtctacgaaaaaggactgcaagcttaacttctccgtttatagtgcctgagaagttgtttcttgataagtttataaaacgttttgagaa |
507 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14507440 |
tgctaaagaaaggtctgcgaaaaaggactgcaagcttaacttctccatttatagtgcctgagaagttgtttcttgataagtttataaaacgttttgagaa |
14507539 |
T |
|
| Q |
508 |
cgagtcttcttatctgttaaagctgtatgaggaaaaactcaacccttggatacaccatagacaaaacttgcacggccatgatcatattttcaggtatttt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14507540 |
cgagtcttcttatctgttaaagctgtatgaggaaaaactcaa-ccttggatacaccatagacaaaacttgcac-gccatgatcatattttcaggtatttt |
14507637 |
T |
|
| Q |
608 |
aaccttaacaatgttaatcttgttccttattcgatttgaatacatatttggtacataatgttgattggagttagtgtatataacttgtttcctttgctta |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14507638 |
aaccttaacaatgttaatcttgttccttattcgatttgaatacatatttagtacataatgttgattggagctagtgtatataacttgtttcctttgctta |
14507737 |
T |
|
| Q |
708 |
tttagac |
714 |
Q |
| |
|
||||||| |
|
|
| T |
14507738 |
tttagac |
14507744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 68 - 608
Target Start/End: Complemental strand, 14475889 - 14475354
Alignment:
| Q |
68 |
gacatgctgaaattggtggaggaattaaaggttttgggttttaatccttcaaaaacatctttcaatctagcactagttgccaaagcaactataaacaaaa |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||| || | || | |||| | | |||||| | || |||| |||| |
|
|
| T |
14475889 |
gacatgctgaaattggtggaggaattaaaggatttgggttttactccttcaaaatcaacctttggtgtagcgttgctagccaaactatctgtaaagaaaa |
14475790 |
T |
|
| Q |
168 |
ccctatggaaagataaagttgacacctttaagaaatggggttggtctgaacaagttattttcgaagcatttagaaggcggcctgagtgtatgttagtatc |
267 |
Q |
| |
|
| | ||| |||| ||||| || |||||||||| ||||||||||||| ||| | || | ||||||||||||||| ||| | ||||||||| ||| |
|
|
| T |
14475789 |
cattgtgggaagagaaagtcgatgcctttaagaagtggggttggtctgctgaagatgttctacaagcatttagaaggcaacctcattgtatgttaacatc |
14475690 |
T |
|
| Q |
268 |
cattaataaattaaatttagtgatgaatttttgggttaatgagttgggttgggatgctcttgcccttgccttagatccatcagtttttggtataagtttc |
367 |
Q |
| |
|
|||| ||||| | ||| |||||||||| |||||||| ||| |||||||||||||||| |||||||||||| || |||||||||||| | ||||||| |
|
|
| T |
14475689 |
cattgataaaattaatctagtgatgaacttttgggtcaatcagttgggttgggatgcacttgcccttgccaaaggaccatcagttttttctttaagtttt |
14475590 |
T |
|
| Q |
368 |
gaaaaaaggaccattccaagggccccaattgtgcaattcctgctaaagaaaggtctacgaaaaaggactgcaagcttaacttctccgtttatagtgcctg |
467 |
Q |
| |
|
||||| ||| | ||||||||||| | | |||||| || || ||||||||| | ||||||| || |||||||||||||| ||| ||| ||||| ||| |
|
|
| T |
14475589 |
gaaaagagggtccttccaagggcctctgtattgcaatatcttctgaagaaaggtttgcgaaaaaagaatgcaagcttaacttgtccatttgtagtgtctg |
14475490 |
T |
|
| Q |
468 |
agaagttgtttcttgataagtttataaaacgttttgagaacgagtcttcttatctgttaaagctgtatgaggaaaaactcaacccttggatacaccatag |
567 |
Q |
| |
|
||||| |||||||||||| || |||||| || || || |||||||||||||| |||||| ||||||||||||||||||| |||| |||||||| | |
|
|
| T |
14475489 |
agaagctgtttcttgatacgtgtataaagggtatt---aaggagtcttcttatctattaaagttgtatgaggaaaaactcaa-tcttgcttacaccatgg |
14475394 |
T |
|
| Q |
568 |
acaaaacttgcacggccatgatcatattttcaggtatttta |
608 |
Q |
| |
|
||||||| ||||| |||||| | |||||||||||||||| |
|
|
| T |
14475393 |
acaaaacatgcac-atcatgattagattttcaggtatttta |
14475354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 68 - 544
Target Start/End: Original strand, 14153190 - 14153666
Alignment:
| Q |
68 |
gacatgctgaaattggtggaggaattaaaggttttgggttttaatccttcaaaaacatctttcaatctagcactagttgccaaagcaactataaacaaaa |
167 |
Q |
| |
|
|||||||| || | |||| |||||||||||| |||||| |||||||||||||||||| |||| | ||||| | ||||||| ||||| ||||||| | |
|
|
| T |
14153190 |
gacatgctcaagtcggtgaaggaattaaaggatttggggtttaatccttcaaaaacaacttttggtgtagcattgcatgccaaaacaactgtaaacaata |
14153289 |
T |
|
| Q |
168 |
ccctatggaaagataaagttgacacctttaagaaatggggttggtctgaacaagttattttcgaagcatttagaaggcggcctgagtgtatgttagtatc |
267 |
Q |
| |
|
|||| |||||||| |||||||| | |||||||||||||||||||||||| ||| | | | ||||||||||||| | ||| | ||||||||| ||| |
|
|
| T |
14153290 |
ccctgtggaaagagaaagttgatgcttttaagaaatggggttggtctgaagaagattctcttgaagcatttagaaagaaaccttattgtatgttaacatc |
14153389 |
T |
|
| Q |
268 |
cattaataaattaaatttagtgatgaatttttgggttaatgagttgggttgggatgctcttgcccttgccttagatccatcagtttttggta-taagttt |
366 |
Q |
| |
|
|||| ||||| || ||||||||||||| |||||||| ||| ||||||||||||||||| | ||| ||||| | | | | | ||||| | ||||||| |
|
|
| T |
14153390 |
cattgataaaatacatttagtgatgaacttttgggtcaatcagttgggttgggatgctatggccattgcc-aaaacaccttatattttgtcattaagttt |
14153488 |
T |
|
| Q |
367 |
cgaaaaaaggaccattccaagggccccaattgtgcaattcctgctaaagaaaggtctacgaaaaaggactgcaagcttaacttctccgtttatagtgcct |
466 |
Q |
| |
|
|||||||||| |||||| |||||| | |||| ||||| || || || |||||| | | | | || |||||||||||||| ||| ||| | ||| || |
|
|
| T |
14153489 |
ggaaaaaaggatcattccgagggccgctgttgtccaatttcttctcaacaaaggtttgacagataagaatgcaagcttaacttatccatttgtggtgact |
14153588 |
T |
|
| Q |
467 |
gagaagttgtttcttgataagtttataaaacgttttgagaacgagtcttcttatctgttaaagctgtatgaggaaaaa |
544 |
Q |
| |
|
|| |||||||||||| ||| ||||||||||||||||||||| ||| |||||||||| |||||| |||||||||||||| |
|
|
| T |
14153589 |
gataagttgtttcttaatatgtttataaaacgttttgagaatgaggcttcttatcttttaaagttgtatgaggaaaaa |
14153666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 80 - 325
Target Start/End: Complemental strand, 14161985 - 14161740
Alignment:
| Q |
80 |
ttggtggaggaattaaaggttttgggttttaatccttcaaaaacatctttcaatctagcactagttgccaaagcaactataaacaaaaccctatggaaag |
179 |
Q |
| |
|
||||||||||||||||||| |||| | ||||||||||||||| ||||||| | |||| || |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14161985 |
ttggtggaggaattaaaggatttgaggtttaatccttcaaaagcatcttttgttatagcgctgcttgccaaaacaactataaacaaaaccctatggaaag |
14161886 |
T |
|
| Q |
180 |
ataaagttgacacctttaagaaatggggttggtctgaacaagttattttcgaagcatttagaaggcggcctgagtgtatgttagtatccattaataaatt |
279 |
Q |
| |
|
| ||||| |||||||||||||||||||| |||||||| ||| |||| ||||||||||||| | ||| | |||||||||| ||||||| ||||| | |
|
|
| T |
14161885 |
agaaagtcgacacctttaagaaatggggctggtctgatgaagatattggtgaagcatttagaaaggatcctcattgtatgttagcatccattgataaaat |
14161786 |
T |
|
| Q |
280 |
aaatttagtgatgaatttttgggttaatgagttgggttgggatgct |
325 |
Q |
| |
|
|||||| ||||||| |||||||| ||| ||||||||||||||||| |
|
|
| T |
14161785 |
taatttactgatgaacttttgggtcaatcagttgggttgggatgct |
14161740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 163 - 549
Target Start/End: Original strand, 14495085 - 14495471
Alignment:
| Q |
163 |
caaaaccctatggaaagataaagttgacacctttaagaaatggggttggtctgaacaagttattttcgaagcatttagaaggcggcctgagtgtatgtta |
262 |
Q |
| |
|
||||||| | |||||||| |||||||| |||| ||||||||||||||||| || ||| | || | |||||||||||| || |||| | |||||| || |
|
|
| T |
14495085 |
caaaaccttgtggaaagagaaagttgatgccttgaagaaatggggttggtcggatgaagatgttcttcaagcatttagaaagcagcctcactgtatgata |
14495184 |
T |
|
| Q |
263 |
gtatccattaataaattaaatttagtgatgaatttttgggttaatgagttgggttgggatgctcttgcccttgccttagatccatcagtttttggtat-a |
361 |
Q |
| |
|
|||||| ||||| | ||||||||||||| |||||||| ||| ||||||||||||||||| | ||| ||||| | ||| | ||||| || | |
|
|
| T |
14495185 |
acatccatcgataaaattaatttagtgatgagcttttgggtcaatcagttgggttgggatgctatggccattgccaaaacaccag-atattttgtcatta |
14495283 |
T |
|
| Q |
362 |
agtttcgaaaaaaggaccattccaagggccccaattgtgcaattcctgctaaagaaaggtctacgaaaaaggactgcaagcttaacttctccgtttatag |
461 |
Q |
| |
|
||||| |||||||||| ||||||||||||| | |||||||||| || || || || ||| | ||||| | || ||||||||||| || ||| || || |
|
|
| T |
14495284 |
agtttggaaaaaaggatcattccaagggccactgttgtgcaatttcttctcaataatggtttgcgaaataagaatgcaagcttaatttatccattcttaa |
14495383 |
T |
|
| Q |
462 |
tgcctgagaagttgtttcttgataagtttataaaacgttttgagaacgagtcttcttatctgttaaagctgtatgaggaaaaactcaa |
549 |
Q |
| |
|
| |||| |||||||||||||||| |||||||||||||||| |||| |||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
14495384 |
ggactgaaaagttgtttcttgatatgtttataaaacgttttaagaatgagtcttcttatcttataaagttgtatgaggaaaaactcaa |
14495471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 69 - 615
Target Start/End: Complemental strand, 14481076 - 14480532
Alignment:
| Q |
69 |
acatgctgaaattggtggaggaattaaaggttttgggttttaatccttcaaaaacatctttcaatctagcactagttgccaaagcaactataaacaaaac |
168 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||| ||||||||||||||| | | || | |||| | |||||| || | ||| |||||| |
|
|
| T |
14481076 |
acatgctgaaacttgtggaggaattaaaggttttggggtttaatccttcaaaagtaacctttggtgtagccttgcgagccaaaacatccgtaagcaaaac |
14480977 |
T |
|
| Q |
169 |
cctatggaaagataaagttgacacctttaagaaatggggttggtctgaacaagttattttcgaagcatttagaaggcggcctgagtgtatgttagtatcc |
268 |
Q |
| |
|
| |||||||| |||||||| |||||||||| |||||||||||||| ||| |||| | |||| |||| || ||||||||| | ||||||| ||| |
|
|
| T |
14480976 |
tttgtggaaagagaaagttgatgcctttaagaagtggggttggtctgatgaagatattatgaaagcgtttaaaaagcggcctgattctatgttaacatct |
14480877 |
T |
|
| Q |
269 |
attaataaattaaatttagtgatgaatttttgggttaatgagttgggttgggatgctcttgcccttgccttagatccatcagtttt-tggtataagtttc |
367 |
Q |
| |
|
||| ||||| | |||||||||||| |||||||| ||| ||||||||||||||||| | ||| ||||| | |||| | |||| | || ||||||| |
|
|
| T |
14480876 |
attgataaagttaatttagtgatgggcttttgggtcaatcagttgggttgggatgctatggccattgccaaaacaccattaattttgtcgt-taagtttg |
14480778 |
T |
|
| Q |
368 |
gaaaaaaggaccattccaagggccccaattgtgcaattcctgctaaagaaaggtctacgaaaaaggactgcaagcttaacttctccgtttatagtgcctg |
467 |
Q |
| |
|
||||||| | |||||| ||||||| ||||||||| || || | |||||| | |||| | || |||||||||||||| ||| ||| | || ||| |
|
|
| T |
14480777 |
gaaaaaacaatcattccgagggcccttgttgtgcaatatcttctgagtaaaggtttgagaaataagagtgcaagcttaacttatccatttgttgttactg |
14480678 |
T |
|
| Q |
468 |
agaagttgtttcttgataagtttataaaacgttttgagaacgagtcttcttatctgttaaagctgtatgaggaaaaactcaacccttggatacaccatag |
567 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||||||||| ||| ||||| || ||||||||||||| ||||| |||||||| |||| |||||| | | |
|
|
| T |
14480677 |
agaagaggtttcttgataggtttataaaacattttgagaatgaggcttctaatatgttaaagctgtacgaggacaaactcaa-tcttgcatacactaggg |
14480579 |
T |
|
| Q |
568 |
acaaaacttgcacggccatgatcatattttcaggtattttaaccttaa |
615 |
Q |
| |
|
|||||||||||| | |||||| | ||||||| |||||||| |||||| |
|
|
| T |
14480578 |
acaaaacttgca-tgtcatgattagattttcaagtattttagccttaa |
14480532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 173 - 652
Target Start/End: Original strand, 14502582 - 14503060
Alignment:
| Q |
173 |
tggaaagataaagttgacacctttaagaaatggggttggtctgaacaagttattttcgaagcatttagaaggcggcctgagtgtatgttagtatccatta |
272 |
Q |
| |
|
|||||||| |||||||| |||||||||| ||||||||||| || ||| | || | |||||||||| || || |||| | |||||| || ||||||| |
|
|
| T |
14502582 |
tggaaagagaaagttgatgcctttaagaagtggggttggtcggatgaagatgttcttgaagcatttaaaaagcagcctcactgtatgataacatccattg |
14502681 |
T |
|
| Q |
273 |
ataaattaaatttagtgatgaatttttgggttaatgagttgggttgggatgctcttgcccttgccttagatcc--atcagtttttggtataagtttcgaa |
370 |
Q |
| |
|
||||| | ||||||||||||| |||||||| ||| ||||||||||||||||| | | ||||| | || || | ||| | || ||||||| ||| |
|
|
| T |
14502682 |
ataaaattaatttagtgatgagcttttgggtcaatcagttgggttgggatgctaaggacattgccaaaacaccggat-attttgtcgt-taagtttggaa |
14502779 |
T |
|
| Q |
371 |
aaaaggaccattccaagggccccaattgtgcaattcctgctaaagaaaggtctacgaaaaaggactgcaagcttaacttctccgtttatagtgcctgaga |
470 |
Q |
| |
|
||||||| ||||||||| ||| | | |||||||| || || | || ||| | ||||| | || ||||||||||| || ||| || || ||||||||| |
|
|
| T |
14502780 |
aaaaggatcattccaagagccactgtcgtgcaatttctccttagtaatggtttgcgaaataagaatgcaagcttaatttatccattcttaatgcctgaga |
14502879 |
T |
|
| Q |
471 |
agttgtttcttgataagtttataaaacgttttgagaacgagtcttcttatctgttaaagctgtatgaggaaaaactcaacccttggatacaccatagaca |
570 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| | | |||||||||| ||||||||||| || ||||||||||| |||| | |||||| ||| |
|
|
| T |
14502880 |
agttgtttcttgatatgtttataaaacgttttgagaatgcggcttcttatcttttaaagctgtacgaagaaaaactcaa-tcttgcacacaccaagaaca |
14502978 |
T |
|
| Q |
571 |
aaacttgcacggccatgatcata-ttttcaggtattttaaccttaacaatgttaatcttgttccttattcgatttgaatacat |
652 |
Q |
| |
|
||| |||| | ||||||| | ||||||||||||||| |||||| ||||||| |||| ||| ||||| ||||||||||||| |
|
|
| T |
14502979 |
aaaattgc-gtgtaatgatcagatttttcaggtattttagccttaataatgttattcttattctttatttgatttgaatacat |
14503060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 68 - 325
Target Start/End: Original strand, 14145209 - 14145466
Alignment:
| Q |
68 |
gacatgctgaaattggtggaggaattaaaggttttgggttttaatccttcaaaaacatctttcaatctagcactagttgccaaagcaactataaacaaaa |
167 |
Q |
| |
|
||||||||||| | |||| ||||| | |||| |||||| |||||||||||||||||| |||| | |||| | | |||||| || | || |||||| |
|
|
| T |
14145209 |
gacatgctgaagtcggtgaaggaagtcaaggatttggggtttaatccttcaaaaacaacttttggtgcagcattgatagccaaaacatttgtacacaaaa |
14145308 |
T |
|
| Q |
168 |
ccctatggaaagataaagttgacacctttaagaaatggggttggtctgaacaagttattttcgaagcatttagaaggcggcctgagtgtatgttagtatc |
267 |
Q |
| |
|
||||||||||||| |||||||| || | ||||||||||||||||||||| ||| | | | ||||||||||||| | ||| | ||||||||| ||| |
|
|
| T |
14145309 |
ccctatggaaagagaaagttgatgccctaaagaaatggggttggtctgaagaagattctcttgaagcatttagaaagaaaccttattgtatgttaacatc |
14145408 |
T |
|
| Q |
268 |
cattaataaattaaatttagtgatgaatttttgggttaatgagttgggttgggatgct |
325 |
Q |
| |
|
|||||| ||| |||||||||||||||| |||||||| ||| ||||||| ||||||||| |
|
|
| T |
14145409 |
cattaaaaaaataaatttagtgatgaacttttgggtcaatcagttgggatgggatgct |
14145466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 436 - 545
Target Start/End: Original strand, 14147089 - 14147198
Alignment:
| Q |
436 |
tgcaagcttaacttctccgtttatagtgcctgagaagttgtttcttgataagtttataaaacgttttgagaacgagtcttcttatctgttaaagctgtat |
535 |
Q |
| |
|
|||||||||||||| ||| ||| | ||| |||| |||||||||||| || ||||||||||||||||||||| ||| |||||||||| |||||| ||||| |
|
|
| T |
14147089 |
tgcaagcttaacttatccatttgtcgtgactgataagttgtttcttagtatgtttataaaacgttttgagaatgaggcttcttatcttttaaagttgtat |
14147188 |
T |
|
| Q |
536 |
gaggaaaaac |
545 |
Q |
| |
|
|||||||||| |
|
|
| T |
14147189 |
gaggaaaaac |
14147198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 436 - 573
Target Start/End: Original strand, 14521260 - 14521395
Alignment:
| Q |
436 |
tgcaagcttaacttctccgtttatagtgcctgagaagttgtttcttgataagtttataaaacgttttgagaacgagtcttcttatctgttaaagctgtat |
535 |
Q |
| |
|
|||||||||||||| ||| ||| || || |||||||||||| | ||||| ||| || ||| || || |||| |||| ||| ||||| |||||| ||||| |
|
|
| T |
14521260 |
tgcaagcttaacttgtccttttgtaatgtttgagaagttgtt-cgtgatatgttaatcaaaggtattaagaaggagtattcctatctattaaagttgtat |
14521358 |
T |
|
| Q |
536 |
gaggaaaaactcaacccttggatacaccatagacaaaa |
573 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||||| |
|
|
| T |
14521359 |
gaggaaaaactcaa-ccttgcatacaccagggacaaaa |
14521395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 325
Target Start/End: Original strand, 14485631 - 14485793
Alignment:
| Q |
163 |
caaaaccctatggaaagataaagttgacacctttaagaaatggggttggtctgaacaagttattttcgaagcatttagaaggcggcctgagtgtatgtta |
262 |
Q |
| |
|
||||| || |||||| || |||||||| ||||||||||||||| |||||||| ||| | | |||||||||| || || ||| | ||||||||| |
|
|
| T |
14485631 |
caaaagccgatggaatgaaaaagttgatgtctttaagaaatggggatggtctgatgaagatgtccgtgaagcatttaaaaagcaacctcaatgtatgtta |
14485730 |
T |
|
| Q |
263 |
gtatccattaataaattaaatttagtgatgaatttttgggttaatgagttgggttgggatgct |
325 |
Q |
| |
|
||||||| ||||| |||| | ||||||||| |||||||| ||| |||| |||||||||||| |
|
|
| T |
14485731 |
acatccattgataaaataaactcagtgatgaacttttgggtcaatcagttaggttgggatgct |
14485793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 15024161 - 15024219
Alignment:
| Q |
182 |
aaagttgacacctttaagaaatggggttggtctgaacaagttattttcgaagcatttag |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||| | ||||||||||| |
|
|
| T |
15024161 |
aaagttgacacctttaagaaatggggttggtctgatgaaaatattgttgaagcatttag |
15024219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 436 - 551
Target Start/End: Original strand, 14513333 - 14513446
Alignment:
| Q |
436 |
tgcaagcttaacttctccgtttatagtgcctgagaagttgtttcttgataagtttataaaacgttttgagaacgagtcttcttatctgttaaagctgtat |
535 |
Q |
| |
|
|||||||||||||| ||| ||| || || ||||||||||||| | | ||| |||||| ||| || || |||| |||| ||| ||||| |||||| ||||| |
|
|
| T |
14513333 |
tgcaagcttaacttgtcc-tttgtaatgtctgagaagttgtt-catcatatgtttatcaaaggtattaagaaggagtattcctatctattaaagttgtat |
14513430 |
T |
|
| Q |
536 |
gaggaaaaactcaacc |
551 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
14513431 |
gtggaaaaactcaacc |
14513446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 543
Target Start/End: Complemental strand, 14161679 - 14161522
Alignment:
| Q |
386 |
agggccccaattgtgcaattcctgctaaagaaaggtctacgaaaaaggactgcaagcttaacttctccgtttatagtgcctgagaagttgtttcttgata |
485 |
Q |
| |
|
|||||| || ||||||||| || |||||||||||| | || |||| || ||||||||||||| |||| ||| || || |||| |||| ||| ||| | | |
|
|
| T |
14161679 |
agggcctcagttgtgcaatatcttctaaagaaaggtttgcggaaaaagaatgcaagcttaactactccatttgtaatgactgataagtcgttccttaaca |
14161580 |
T |
|
| Q |
486 |
agtttataaaacgttttgagaacgagtcttcttatctgttaaagctgtatgaggaaaa |
543 |
Q |
| |
|
| |||| ||||||| || | ||||| |||||||| |||||||| ||||| ||||| |
|
|
| T |
14161579 |
catacataatacgttttaaggaggagtcatcttatctcttaaagctctatgaagaaaa |
14161522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 9812832 - 9812778
Alignment:
| Q |
68 |
gacatgctgaaattggtggaggaattaaaggttttgggttttaatccttcaaaaa |
122 |
Q |
| |
|
||||||||||| | |||| |||||||||||| |||||| |||||||||||||||| |
|
|
| T |
9812832 |
gacatgctgaagtcggtgaaggaattaaaggatttggggtttaatccttcaaaaa |
9812778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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