View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5088-Insertion-7 (Length: 709)

Name: NF5088-Insertion-7
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5088-Insertion-7
NF5088-Insertion-7
[»] chr7 (10 HSPs)
chr7 (89-525)||(35629093-35629530)
chr7 (104-494)||(35635528-35635918)
chr7 (570-709)||(35629575-35629716)
chr7 (570-679)||(35635993-35636102)
chr7 (7-95)||(35628972-35629060)
chr7 (570-705)||(35632731-35632866)
chr7 (168-310)||(35632337-35632479)
chr7 (234-310)||(35634252-35634328)
chr7 (55-95)||(35635446-35635486)
chr7 (37-95)||(35634012-35634073)
[»] chr3 (7 HSPs)
chr3 (581-705)||(10299133-10299257)
chr3 (581-705)||(10319565-10319689)
chr3 (581-705)||(10336681-10336805)
chr3 (163-482)||(10299366-10299685)
chr3 (163-482)||(10319798-10320117)
chr3 (163-482)||(10336914-10337233)
chr3 (581-679)||(10338459-10338557)
[»] scaffold0581 (1 HSPs)
scaffold0581 (55-91)||(2744-2780)


Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 89 - 525
Target Start/End: Original strand, 35629093 - 35629530
Alignment:
Q  89 tgagagccagatgcatgcgatgaacttcctttaaaccagtctttaatagtcttcttcagcctctgcagccaatgagtggttaatccagaccgtgcaaaag 188  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35629093 tgagagccagatgcattcgatgaacttcctttaaaccggtctttaatagtcttcttcagcctctgcagccaatgagtggttaatccagaccgtgcaaaag 35629192  T
Q  189 cagatggtgtaggtctgtcagatgagcttttgtaggacaaattatgtatgggcatcctcagaaaagacgttttgtcaaagaacacaacaatcacacttat 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35629193 cagatggtgtaggtctgtcagatgagcttttgtaggacaaattatgtacgggcatcctcagaaacgacgttttgtcaaagaacacaacaatcacacttat 35629292  T
Q  289 atcatcatgaaaagacctcctgttcccattgccacgtcccagattagcatgcatcatgttattacaggtaacattcccattagcagccgcttccactaga 388  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||    
T  35629293 atcatcatgaaaagacctcctgttcccatcgccacgtcccagattagcatgcatcatgctattacaggtaacattcccattagcagccgctttcgctaga 35629392  T
Q  389 acagtactcacaagcctttttgcaattccctgcaaaatccaccaaagc--ataactaaatcaaaagccagcaaacataacggtaatgactcaaattcgtc 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35629393 acagtactcacaagcctttttgcaattccctgcaaaatccaccaaagcatataactaaatcaaaagccagcaaacataacggtaatgactcaaattcgtc 35629492  T
Q  487 tttgatgcnnnnnnncacaaatacttattttcattttat 525  Q
    ||||||||       ||||||||||||||||||||||||    
T  35629493 tttgatgc-aaaaaacacaaatacttattttcattttat 35629530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 104 - 494
Target Start/End: Original strand, 35635528 - 35635918
Alignment:
Q  104 tgcgatgaacttcctttaaaccagtctttaatagtcttcttcagcctctgcagccaatgagtggttaatccagaccgtgcaaaagcagatggtgtaggtc 203  Q
    |||||||||||| ||| ||||| || |||||||||||||| |||||||||||||| |||  ||||||||||||||  ||||||||| |||| ||||||||    
T  35635528 tgcgatgaacttgcttgaaaccggtttttaatagtcttctgcagcctctgcagcccatgcatggttaatccagactctgcaaaagctgatgttgtaggtc 35635627  T
Q  204 tgtcagatgagcttttgtaggacaaattatgtatgggcatcctcagaaaagacgttttgtcaaagaacacaacaatcacacttatatcatcatgaaaaga 303  Q
    || |||||||||||||||||||||||||||||| ||||||||||||||  ||| ||||||| |||||||||||||||||||||||||||||||||||| |    
T  35635628 tggcagatgagcttttgtaggacaaattatgtaggggcatcctcagaatcgactttttgtccaagaacacaacaatcacacttatatcatcatgaaaata 35635727  T
Q  304 cctcctgttcccattgccacgtcccagattagcatgcatcatgttattacaggtaacattcccattagcagccgcttccactagaacagtactcacaagc 403  Q
    |||||||||||||| |||||||||||||||||||| | ||||| ||||| |||||  ||||| ||||||||||||||   ||||||||||||||||||||    
T  35635728 cctcctgttcccatcgccacgtcccagattagcattcttcatggtattataggtagaattcctattagcagccgcttgtgctagaacagtactcacaagc 35635827  T
Q  404 ctttttgcaattccctgcaaaatccaccaaagcataactaaatcaaaagccagcaaacataacggtaatgactcaaattcgtctttgatgc 494  Q
    ||||||||||||||||| ||||  ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35635828 ctttttgcaattccctgaaaaaatcaccatagcataactaaatcaaaagccagcaaacataacagtaatgactcaaattcgtctttgatgc 35635918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 570 - 709
Target Start/End: Original strand, 35629575 - 35629716
Alignment:
Q  570 tcatagaaatcgatat--atacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaa 667  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35629575 tcatagaaatcgatatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaa 35629674  T
Q  668 atataagaaactcgtcactatatgttaaaactctagtacgca 709  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  35629675 atataagaaacttgtcactatatgttaaaactctagtacgca 35629716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 570 - 679
Target Start/End: Original strand, 35635993 - 35636102
Alignment:
Q  570 tcatagaaatcgatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaat 669  Q
    ||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35635993 tcatagaaatcgatatacacatatatttcttgaattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaat 35636092  T
Q  670 ataagaaact 679  Q
    || |||||||    
T  35636093 atcagaaact 35636102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 35628972 - 35629060
Alignment:
Q  7 atccaccttgttctactaattctgtttaagattcttccaaggactctgagcccgagaactctgacctaaaaggctctgagtttgagagc 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35628972 atccaccttgttctactaattctgtttaagattcttccaaggactctgagcccgagaactctgacctaaaaggctctgagtttgagagc 35629060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 570 - 705
Target Start/End: Original strand, 35632731 - 35632866
Alignment:
Q  570 tcatagaaatcgatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaat 669  Q
    ||||||| || ||||||||| ||||||||||||||| ||||||||||||||| ||||||| |||||||||||||| |||||||||||| |||| ||||||    
T  35632731 tcatagatatggatatatacatacatttcttggattcttttgaacaatttcagctgcttgctcatttgacaagaactcccaaagtccaacagacgcaaat 35632830  T
Q  670 ataagaaactcgtcactatatgttaaaactctagta 705  Q
    ||||||||||  ||| | | ||||||||||||||||    
T  35632831 ataagaaacttatcattctctgttaaaactctagta 35632866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 168 - 310
Target Start/End: Original strand, 35632337 - 35632479
Alignment:
Q  168 ttaatccagaccgtgcaaaagcagatggtgtaggtctgtcagatgagcttttgtaggacaaattatgtatgggcatcctcagaaaagacgttttgtcaaa 267  Q
    |||||||||||||||||||| |||||||   |||  ||||| |||||| | |||||||||||||||||| | ||  |||||||||  || ||||| | ||    
T  35632337 ttaatccagaccgtgcaaaatcagatggcagaggcgtgtcaaatgagcatatgtaggacaaattatgtacgcgccgcctcagaaacaactttttggccaa 35632436  T
Q  268 gaacacaacaatcacacttatatcatcatgaaaagacctcctg 310  Q
    ||||| |||||| ||||||||||||||||||||||||||||||    
T  35632437 gaacaaaacaatgacacttatatcatcatgaaaagacctcctg 35632479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 35634252 - 35634328
Alignment:
Q  234 gtatgggcatcctcagaaaagacgttttgtcaaagaacacaacaatcacacttatatcatcatgaaaagacctcctg 310  Q
    ||||| || |||||||||| ||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35634252 gtatgcgcctcctcagaaacgaatttttgtcaaagaacacaacaatcacacttatatcatcacgaaaagacctcctg 35634328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 35635446 - 35635486
Alignment:
Q  55 agcccgagaactctgacctaaaaggctctgagtttgagagc 95  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  35635446 agcccgagaactctgacccaaaaggctctgagtttgagagc 35635486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 35634012 - 35634073
Alignment:
Q  37 attcttccaaggactctgagcccgagaactctg---acctaaaaggctctgagtttgagagc 95  Q
    |||||| ||||| ||||||||||||||||||||   ||| ||||||||||||||||||||||    
T  35634012 attctttcaagggctctgagcccgagaactctgaccacccaaaaggctctgagtttgagagc 35634073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 581 - 705
Target Start/End: Complemental strand, 10299257 - 10299133
Alignment:
Q  581 gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactc 680  Q
    ||||||||| ||||||||| ||||| ||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||| |||||     
T  10299257 gatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactt 10299158  T
Q  681 gtcactatatgttaaaactctagta 705  Q
     ||| ||| ||||||||||||||||    
T  10299157 atcattatctgttaaaactctagta 10299133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 581 - 705
Target Start/End: Complemental strand, 10319689 - 10319565
Alignment:
Q  581 gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactc 680  Q
    ||||||||| ||||||||| ||||| ||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||| |||||     
T  10319689 gatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactg 10319590  T
Q  681 gtcactatatgttaaaactctagta 705  Q
     ||| ||| ||||||||||||||||    
T  10319589 atcattatctgttaaaactctagta 10319565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 581 - 705
Target Start/End: Complemental strand, 10336805 - 10336681
Alignment:
Q  581 gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactc 680  Q
    ||||||||| ||||||||| ||||| ||| ||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||| |||||     
T  10336805 gatatatacatacatttctaggattctttcgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactg 10336706  T
Q  681 gtcactatatgttaaaactctagta 705  Q
     ||| ||| ||||||||||||||||    
T  10336705 atcattatctgttaaaactctagta 10336681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 163 - 482
Target Start/End: Complemental strand, 10299685 - 10299366
Alignment:
Q  163 agtggttaatccagaccgtgcaaaagcagatggtgtaggtctgtcagatgagcttttgtaggacaaattatgtatgggcatcctcagaaaagacgttttg 262  Q
    ||||||||||||| |  |||||||| | ||| ||  |||  |||||||||||| | |||||||||||||| |||  |||  |||| |||| |||||||||    
T  10299685 agtggttaatccaaattgtgcaaaatctgattgtacaggcatgtcagatgagcctgtgtaggacaaattaagtacaggctgcctcggaaacgacgttttg 10299586  T
Q  263 tcaaagaacacaacaatcacacttatatcatcatgaaaagacctcctgttcccattgccacgtcccagattagcatgcatcatgttattacaggtaacat 362  Q
    || |||||||| |||||||||||||||||||||||||||||||||| | || |||||   ||||||  |  |||   |   || ||  || ||||||| |    
T  10299585 tccaagaacaccacaatcacacttatatcatcatgaaaagacctccggctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaacct 10299486  T
Q  363 tcccattagcagccgcttccactagaacagtactcacaagcctttttgcaattccctgcaaaatccaccaaagcataactaaatcaaaagccagcaaaca 462  Q
    |||   |   ||| ||| || ||||| | ||||||| ||||||||||||||||||||||||||||||||| || |||| ||||| ||||||| ||||| |    
T  10299485 tccttcttttagcagctaccgctagagcggtactcagaagcctttttgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaata 10299386  T
Q  463 taacggtaatgactcaaatt 482  Q
    |||| |||| ||||||||||    
T  10299385 taactgtaaagactcaaatt 10299366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 163 - 482
Target Start/End: Complemental strand, 10320117 - 10319798
Alignment:
Q  163 agtggttaatccagaccgtgcaaaagcagatggtgtaggtctgtcagatgagcttttgtaggacaaattatgtatgggcatcctcagaaaagacgttttg 262  Q
    ||||||||||||| |  |||||||| | ||| ||  ||| ||||||||||||| | |||||||||||||| |||  |||  |||| |||| |||||||||    
T  10320117 agtggttaatccaaattgtgcaaaatctgattgtacaggcctgtcagatgagcctgtgtaggacaaattaagtacaggctgcctcggaaacgacgttttg 10320018  T
Q  263 tcaaagaacacaacaatcacacttatatcatcatgaaaagacctcctgttcccattgccacgtcccagattagcatgcatcatgttattacaggtaacat 362  Q
    || |||||||| |||||||||||||||||||||||||||||||||| | || |||||   ||||||  |  |||   |   || ||  || ||||||| |    
T  10320017 tccaagaacaccacaatcacacttatatcatcatgaaaagacctccggctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaacct 10319918  T
Q  363 tcccattagcagccgcttccactagaacagtactcacaagcctttttgcaattccctgcaaaatccaccaaagcataactaaatcaaaagccagcaaaca 462  Q
    |||   |   ||| ||| || ||||| | ||||||| ||||||||| ||||||||||||||||||||||| || |||| ||||| ||||||| ||||| |    
T  10319917 tccttcttttagcagctaccgctagagcggtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaata 10319818  T
Q  463 taacggtaatgactcaaatt 482  Q
    |||| |||| ||||||||||    
T  10319817 taactgtaaagactcaaatt 10319798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 163 - 482
Target Start/End: Complemental strand, 10337233 - 10336914
Alignment:
Q  163 agtggttaatccagaccgtgcaaaagcagatggtgtaggtctgtcagatgagcttttgtaggacaaattatgtatgggcatcctcagaaaagacgttttg 262  Q
    ||||||||||||| |  |||||||| | ||| ||  ||| ||||||||||||| | |||||||||||||| |||  |||  |||| |||| |||||||||    
T  10337233 agtggttaatccaaattgtgcaaaatctgattgtacaggcctgtcagatgagcctgtgtaggacaaattaagtacaggctgcctcggaaacgacgttttg 10337134  T
Q  263 tcaaagaacacaacaatcacacttatatcatcatgaaaagacctcctgttcccattgccacgtcccagattagcatgcatcatgttattacaggtaacat 362  Q
    || |||||||| |||||||||||||||||||||||||||||||||| | || |||||   ||||||  |  |||   |   || ||  || ||||||| |    
T  10337133 tccaagaacaccacaatcacacttatatcatcatgaaaagacctccggctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaacct 10337034  T
Q  363 tcccattagcagccgcttccactagaacagtactcacaagcctttttgcaattccctgcaaaatccaccaaagcataactaaatcaaaagccagcaaaca 462  Q
    |||   |   ||| ||| || ||||| | ||||||| ||||||||| ||||||||||||||||||||||| || |||| ||||| ||||||| ||||| |    
T  10337033 tccttcttttagcagctaccgctagagcggtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaata 10336934  T
Q  463 taacggtaatgactcaaatt 482  Q
    |||| |||| ||||||||||    
T  10336933 taactgtaaagactcaaatt 10336914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 581 - 679
Target Start/End: Complemental strand, 10338557 - 10338459
Alignment:
Q  581 gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaact 679  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||| | |||||||||||||| |||||||||||| |||| ||||||||| ||||||    
T  10338557 gatatatacatacatttcttggattcttttgaacaatttcaactgctagctcatttgacaagaactcccaaagtccaacagaggcaaatatatgaaact 10338459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0581 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 2744 - 2780
Alignment:
Q  55 agcccgagaactctgacctaaaaggctctgagtttga 91  Q
    |||||||||||||||||||||||||||||||||||||    
T  2744 agcccgagaactctgacctaaaaggctctgagtttga 2780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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