View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5088-Insertion-9 (Length: 513)
Name: NF5088-Insertion-9
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088-Insertion-9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 8 - 513
Target Start/End: Original strand, 11776447 - 11776959
Alignment:
| Q |
8 |
ctagcaactgacctgtgtctcatatgttttggcaacaatctcattttattttggcatatcaatttgtttggagacaatccatctctatatatagacaaac |
107 |
Q |
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| T |
11776447 |
ctagcaactgacttgtgtctcatatgttttggcaataatctcattttattttggcatatcaatttgtttggagacaatccatctctatatatagacacac |
11776546 |
T |
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| Q |
108 |
accacaacaaaatgaatgtcatttttaatttttaatgtagtattaatttattcattgtacctcacagaatattataatcccttaagttgtataagctggg |
207 |
Q |
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| T |
11776547 |
accacaacaaaatgaatgtcatttttaatttttaatgtagtattaatttattcattgtacctcacaaaatattataatcccttaagatatataagctggg |
11776646 |
T |
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| Q |
208 |
gtctagggtttgaacctcagttctacatattgcaacatctctaccgactaagatatgctcacgatgacaattcattatgcatttaagataatagttaatg |
307 |
Q |
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| T |
11776647 |
gtttggggtttgaacctcagttctacatattgcaacatccctaccgactaagatatgctcacgatgacaattcattatgcatttaagataatagttaatg |
11776746 |
T |
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| Q |
308 |
cacagattattaacaatga--------taaaattagctttctctttcgttcatctatag-nnnnnnnctatataatttttgtgaaataaacaaatatgtc |
398 |
Q |
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||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| |||| |
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| T |
11776747 |
tacaaattattaacaatgataatttggtaaaattagctttctctttcgttcatctatagttttttttctatataa-ttgtgtgaaataaacaaatgtgtc |
11776845 |
T |
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| Q |
399 |
aattgttagtttttgttgttggcgtgaagtggatgtcctctgcgtgcaattgcagagactaatctccgaaactaatattttttcttgaagtgagtaatag |
498 |
Q |
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| T |
11776846 |
aattgttagtttttgttgttggtgtgaagtggatgtcctctgcacgcaattgcagagactaatctccaaaactaatatcttttcttg-agtgagtaatag |
11776944 |
T |
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| Q |
499 |
tatagtttccgatcc |
513 |
Q |
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| T |
11776945 |
tatagtttctgatcc |
11776959 |
T |
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