View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5088_high_11 (Length: 395)
Name: NF5088_high_11
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 35628667 - 35628287
Alignment:
| Q |
1 |
ctctaaccccagttgaatggtttcaatatgtaatttcctcaacagcccaaatgagaaagagacaggattgaaattttgaaataaatacaaagaattcaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35628667 |
ctctaaccccagttgaatggtttcaatatgtaatttcctcagcagcccaaatgagaaagagacaagattgaaattttgaaataaatacaaagaattcaac |
35628568 |
T |
|
| Q |
101 |
gttgcccttgaaagaagaaaaagattgccaaacttagaattataaagtaaaacaatgaatgtccaaaggattattcaagtggtatgtgttagtacatcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35628567 |
gttgcccttgaaagaagaaaaagattgccaaacttagaattataaagtaaaacaatgaatatccaaaggattattcaagtggtatgtgttagtacatcaa |
35628468 |
T |
|
| Q |
201 |
aaaagtattttttaactaacaagttcaagatttgatctctgaggctaaccaatcttcttcaccctaacaaataaattactaataatcggcctatnnnnnn |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35628467 |
aaaagtattttttaactaacaagttcaagatttgatctctgaggctaaccaatcttcttcaccctaacaaataaattactaataatctgcctataaaaca |
35628368 |
T |
|
| Q |
301 |
nnnnnnnnnnnnnnnnnntacataaactatactagggacttggattaattgtctcactctttcatagttacataatctgtg |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35628367 |
aacaagaaaaacaaaaactacataaactatactagggacttggattaattgtctcactctttcatagttacataatctgtg |
35628287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University