View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5088_high_17 (Length: 303)

Name: NF5088_high_17
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5088_high_17
NF5088_high_17
[»] chr2 (9 HSPs)
chr2 (169-303)||(14494428-14494562)
chr2 (168-303)||(14501914-14502049)
chr2 (169-294)||(14476332-14476457)
chr2 (169-294)||(14484974-14485099)
chr2 (187-289)||(14144664-14144766)
chr2 (179-295)||(14481513-14481629)
chr2 (187-288)||(14152646-14152747)
chr2 (179-282)||(14165506-14165609)
chr2 (105-138)||(14506893-14506926)


Alignment Details
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 169 - 303
Target Start/End: Original strand, 14494428 - 14494562
Alignment:
Q  169 cccattacccttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaattt 268  Q
    |||||| || |||||||||||||| | ||||||| |||| ||||||||||||||| |||||||||||||||| ||||  |||||||| |||||||||| |    
T  14494428 cccatttccattttctctccatttatgcaccaacgcttctgattcaacctcttttgctgtctcatacctcattcacaagtttgggtttgacccacaatct 14494527  T
Q  269 gcttccaaactctgctccacttacaagctctgttt 303  Q
    |||||||||||||||||||||||||||||||||||    
T  14494528 gcttccaaactctgctccacttacaagctctgttt 14494562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 168 - 303
Target Start/End: Original strand, 14501914 - 14502049
Alignment:
Q  168 ccccattacccttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatt 267  Q
    |||||||||| |||||||| ||||| | ||||||| |||||||||||||||| ||| ||||||||||||||||| ||| |||||| || |||||||||||    
T  14501914 ccccattaccattttctcttcatttctgcaccaacacttcagattcaacctcattttctgtctcatacctcatcaacaattttggctttgacccacaatt 14502013  T
Q  268 tgcttccaaactctgctccacttacaagctctgttt 303  Q
    ||||||||||||||||||||| ||||||||| ||||    
T  14502014 tgcttccaaactctgctccacctacaagctccgttt 14502049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 169 - 294
Target Start/End: Complemental strand, 14476457 - 14476332
Alignment:
Q  169 cccattacccttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaattt 268  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||||||| ||||||||| ||| |||||| || |||||||||| |    
T  14476457 cccattaccctttcctctccatttttgcaccaacacttcagattcaacctcttttgctgtctcctacctcatcaacaattttggctttgacccacaatct 14476358  T
Q  269 gcttccaaactctgctccacttacaa 294  Q
    ||||||||||| | ||||||||||||    
T  14476357 gcttccaaactttcctccacttacaa 14476332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 169 - 294
Target Start/End: Original strand, 14484974 - 14485099
Alignment:
Q  169 cccattacccttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaattt 268  Q
    ||||||||| ||||||| | |||||||||||||| ||||||||||||||| |||| | ||||| ||||||||| ||| |||||| ||   ||||||||||    
T  14484974 cccattaccattttctcactatttttccaccaacacttcagattcaaccttttttgccgtctcttacctcatcaacaattttggcttttccccacaattt 14485073  T
Q  269 gcttccaaactctgctccacttacaa 294  Q
    ||||||||||| | ||||||||||||    
T  14485074 gcttccaaactttcctccacttacaa 14485099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 14144664 - 14144766
Alignment:
Q  187 ccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatttgcttccaaactctgctcc 286  Q
    |||||| | ||||||| |||||||||||||||||||| | | ||| |||||||| |||| ||||||||| ||||||||||||||||||||||| ||||||    
T  14144664 ccatttctgcaccaacccttcagattcaacctcttttgcagcctcctacctcattcacaattttgggtttgacccacaatttgcttccaaactatgctcc 14144763  T
Q  287 act 289  Q
    |||    
T  14144764 act 14144766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 179 - 295
Target Start/End: Complemental strand, 14481629 - 14481513
Alignment:
Q  179 ttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatttgcttccaaac 278  Q
    |||||||| | ||||| ||||||  |||||||||||||||||||| | ||||||||||||||| ||| |||||| ||   ||||||||||||||||||||    
T  14481629 ttttctcttcctttttgcaccaatacttcagattcaacctcttttgcagtctcatacctcatcaacaattttggcttttccccacaatttgcttccaaac 14481530  T
Q  279 tctgctccacttacaag 295  Q
    | || ||||||||||||    
T  14481529 tttgttccacttacaag 14481513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 288
Target Start/End: Original strand, 14152646 - 14152747
Alignment:
Q  187 ccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatttgcttccaaactctgctcc 286  Q
    |||||| | ||||||| ||||||||||||||||| || | ||||| ||||||||| ||| |||||| || |||||||||| ||||||||||||||| |||    
T  14152646 ccatttctgcaccaacacttcagattcaacctctcttgcagtctcctacctcatcaacaattttggttttgacccacaatctgcttccaaactctgttcc 14152745  T
Q  287 ac 288  Q
    ||    
T  14152746 ac 14152747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 282
Target Start/End: Complemental strand, 14165609 - 14165506
Alignment:
Q  179 ttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatttgcttccaaac 278  Q
    |||||||| ||||| | ||||||| ||||| |||||||||| ||| | | ||| |||||||| |||| |||||||||   ||||||||||||||||||||    
T  14165609 ttttctctacatttctgcaccaacacttcaaattcaacctcatttgcagcctcttacctcattcacaattttgggtttaccccacaatttgcttccaaac 14165510  T
Q  279 tctg 282  Q
    ||||    
T  14165509 tctg 14165506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 14506893 - 14506926
Alignment:
Q  105 aaatgttgaatattcatcgttatagagtccttct 138  Q
    ||||||||||||||||||||||||||||||||||    
T  14506893 aaatgttgaatattcatcgttatagagtccttct 14506926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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