View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5088_high_23 (Length: 248)
Name: NF5088_high_23
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 32393265 - 32393034
Alignment:
| Q |
1 |
cacatttcattaaaaacaatactatggctactatcatcgagtaaaagtgcaatcatagttggcaataaataaacaggtaaatataagaaaaattgttcag |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32393265 |
cacatttcatgaaaaacaatactatggctactatcatcaagtaaaagtgcaatcatagttggcaataaataaacaggtaaatataagaaaaattgttcag |
32393166 |
T |
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| Q |
101 |
cagtcagcacctgatctgttgattgttaaat-aaagggtaaattattttattgattttctcaacctacaaattatacagtatacaaaatacaannnnnnn |
199 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
32393165 |
cagtcagcacctgatccgttgattgttaaataaaagggtaaattattttattgattttctcaacctacaaattatacagtatccacaatacaattttttt |
32393066 |
T |
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| Q |
200 |
atatgaatgaagtaagaattatctcaacaaat |
231 |
Q |
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| T |
32393065 |
acatgaatgaagtaagaattatctcaacaaat |
32393034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 26162487 - 26162308
Alignment:
| Q |
1 |
cacatttcattaaaaacaatactatggctactatcatcgagtaaaagtgcaatcatagttggcaataaataaacaggtaaatataagaaaaattgttcag |
100 |
Q |
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|||||||||| |||| ||||| |||||||| |||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26162487 |
cacatttcatgaaaagcaataatatggctatcatcatcaagtgaaagtgcaatcatagttggcaataaataaacaagtaaatataagaaaaattgttcag |
26162388 |
T |
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| Q |
101 |
cagtcagcacctgatctgttgattgttaaataaagggtaaattattttattgattttctcaacctacaaattatacagtat |
181 |
Q |
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| T |
26162387 |
cagtcagcacctgatccactgattgttaaattaagggtaaatta-tttattgattttctcaacctacaaattatacagtat |
26162308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 33605989 - 33605941
Alignment:
| Q |
44 |
aaagtgcaatcatagttggcaataaataaacaggtaaatataagaaaaa |
92 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
33605989 |
aaagtgcaatcatagttgacaataaataaaaaggtaaatataagaaaaa |
33605941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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