View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5088_high_24 (Length: 247)
Name: NF5088_high_24
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088_high_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 4 - 229
Target Start/End: Complemental strand, 6041100 - 6040875
Alignment:
| Q |
4 |
atgtcgaagaaaatagaacttacgaattagcaatatgacggagaagatcgtcggtaccaaaatactcgatattgatatcggtcacatgaccggagctgta |
103 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6041100 |
atgtagaagaaaatagaacttacgaattagcaatatgacggagaagatcgtcggtaccaaaatactcgatattgatatcggtcacatgaccggagctgta |
6041001 |
T |
|
| Q |
104 |
atgaacggcgcgttggcacaaaagctccaaatactcgtcggtgccaaggtcagtcccgatattgggcatgtcgatggtgtgatagaggaaaggatccttt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6041000 |
atgaacggcgcgttggcacaaaagctccaaatactcgtcggtgccaaggtcagtcccgatattgggcatgtcgatggtgtgatagaggaaaggatccttt |
6040901 |
T |
|
| Q |
204 |
gagattttgcgccatgtggtgcaaac |
229 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
6040900 |
gagattttgcgccatgtggtgcaaac |
6040875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 6045725 - 6045506
Alignment:
| Q |
10 |
aagaaaatagaacttacgaattagcaatatgacggagaagatcgtcggtaccaaaatactcgatattgatatcggtcacatgaccggagctgtaatgaac |
109 |
Q |
| |
|
|||||| | |||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| | || ||||||||||||| ||| |
|
|
| T |
6045725 |
aagaaagtggaacttacgaatcagcgatatgacggagaagatcatcggtaccaaaatactcgatattgatatcggttgcttggccggagctgtaatcaac |
6045626 |
T |
|
| Q |
110 |
ggcgcgttggcacaaaagctccaaatactcgtcggtgccaaggtcagtcccgatattgggcatgtcgatggtgtgatagaggaaaggatcctttgagatt |
209 |
Q |
| |
|
|||||||||||| |||| ||| ||||| ||||| || |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6045625 |
ggcgcgttggcataaaatctctaaataaaagtcggagctgaggtcagtaccgatgttgggcatgtcgatggtgtgatagaggaaaggatcctttgagatt |
6045526 |
T |
|
| Q |
210 |
ttgcgccatgtggtgcaaac |
229 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6045525 |
ttgcgccatgtggtgcaaac |
6045506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 6052254 - 6052189
Alignment:
| Q |
164 |
attgggcatgtcgatggtgtgatagaggaaaggatcctttgagattttgcgccatgtggtgcaaac |
229 |
Q |
| |
|
||||||||||| |||||| || |||| ||||| || || |||||||||||||||||||||||||| |
|
|
| T |
6052254 |
attgggcatgttaatggtgcgaaagagaaaagggtctttggagattttgcgccatgtggtgcaaac |
6052189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 6133649 - 6133714
Alignment:
| Q |
164 |
attgggcatgtcgatggtgtgatagaggaaaggatcctttgagattttgcgccatgtggtgcaaac |
229 |
Q |
| |
|
||||||||||| ||| ||| |||||||| || | ||||||||||||| ||||||| |||||||||| |
|
|
| T |
6133649 |
attgggcatgttgatagtgcgatagagggaatggtcctttgagatttcgcgccatatggtgcaaac |
6133714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 6037257 - 6037198
Alignment:
| Q |
170 |
catgtcgatggtgtgatagaggaaaggatcctttgagattttgcgccatgtggtgcaaac |
229 |
Q |
| |
|
|||||||||||| ||||||||||||| || || |||||||||||||| || |||||||| |
|
|
| T |
6037257 |
catgtcgatggtacgatagaggaaagggtctttggagattttgcgccacgtagtgcaaac |
6037198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 6052391 - 6052333
Alignment:
| Q |
24 |
tacgaattagcaatatgacggagaagatcgtcggtaccaaaatactcgatattgatatc |
82 |
Q |
| |
|
||||||||||| ||| | |||||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
6052391 |
tacgaattagcgatacggtggagaagatcatcagtaccaaaatactcgatgttgatatc |
6052333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University