View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5088_high_30 (Length: 205)
Name: NF5088_high_30
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088_high_30 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 5e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 28273768 - 28273972
Alignment:
| Q |
1 |
ctccaatatttcaccgagatgttcaatccagcaacatattattggactctaagttcactgcaaaagtagcagattttggactttcacggcttgcaccagt |
100 |
Q |
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| T |
28273768 |
ctccaatatttcaccgagatgttaaatccagcaacatattattggactctaagttcactgcaaaagttgcagattttgggctttcacgacttgcaccagt |
28273867 |
T |
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| Q |
101 |
tccagatatggaaggaattgttcctggtcatgtatctactgttgtaaagggaacaccggtaaggctttcataattggatttgacttttctaaattgcgca |
200 |
Q |
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| T |
28273868 |
tccagatatggaaggaattgttcctggtcatgtatctactgtggtaaagggaacaccggtaaggctttcataattggatttgacttttctaaattgcgca |
28273967 |
T |
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| Q |
201 |
agttt |
205 |
Q |
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|||| |
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| T |
28273968 |
tgttt |
28273972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 28 - 193
Target Start/End: Original strand, 28288856 - 28289021
Alignment:
| Q |
28 |
ccagcaacatattattggactctaagttcactgcaaaagtagcagattttggactttcacggcttgcaccagttccagatatggaaggaattgttcctgg |
127 |
Q |
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||||||||||||||||||| |||||| || |||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28288856 |
ccagcaacatattattggattctaagctctctgctaaagtcgcagatttcggactttcacggcttgcaccagttccagatatggaaggaattgtgcctgg |
28288955 |
T |
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| Q |
128 |
tcatgtatctactgttgtaaagggaacaccggtaaggctttcataattggatttgacttttctaaa |
193 |
Q |
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| T |
28288956 |
tcatgtatctactgtggtaaagggtacaccggtaaggctttcataatttgatttggcttttttaaa |
28289021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 32190235 - 32190072
Alignment:
| Q |
1 |
ctccaatatttcaccgagatgttcaatccagcaacatattattggactctaagttcactgcaaaagtagcagattttggactttcacggcttgcaccagt |
100 |
Q |
| |
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|||||||||| ||| ||||||| || | |||||||||||||| ||||| || |||| |||||||| || ||||||||||||||| | || || ||||| |
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| T |
32190235 |
ctccaatattccacagagatgtcaaagctagcaacatattattagactcaaaattcatagcaaaagttgctgattttggactttcaagactagctccagt |
32190136 |
T |
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| Q |
101 |
tccagatatggaaggaattgttcctggtcatgtatctactgttgtaaagggaacaccggtaagg |
164 |
Q |
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||||||||| ||||| | | ||||| ||||||||||| |||||||| || || ||||||||| |
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| T |
32190135 |
tccagatattgaaggcaacttgcctggccatgtatctacagttgtaaaagggaccccggtaagg |
32190072 |
T |
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