View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5088_high_31 (Length: 201)
Name: NF5088_high_31
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 89; Significance: 4e-43; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 14507022 - 14506930
Alignment:
| Q |
1 |
tcaacaacttgatattattcgacacacgcgtggctccaaagaaattccgattgtgaactgcacaagcaagggtgtcgtggtgagatttcaaga |
93 |
Q |
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| T |
14507022 |
tcaacaacttgatattatttgacacacgcgtggctccaaagaaattccgattgtgaactgcacaagcaagggtgtcgtggtgagatttcaaga |
14506930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 14494836 - 14494718
Alignment:
| Q |
83 |
agatttcaagaatgtatacgccaattcataggtcggtatcattagattgttgaggcttgcagaaagtactgtagggttcttactgacaaggttaataatg |
182 |
Q |
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| T |
14494836 |
agattgcaagaatctgtacaccaattcataggttgggactatttgattcttgaggcttacagacaagactctagggttcttacaaacaaggttaacaatg |
14494737 |
T |
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| Q |
183 |
tcagaggtagaagcacctt |
201 |
Q |
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| T |
14494736 |
tcagaggtagaagcgcctt |
14494718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 14162223 - 14162269
Alignment:
| Q |
155 |
agggttcttactgacaaggttaataatgtcagaggtagaagcacctt |
201 |
Q |
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| T |
14162223 |
agggctcttactgacaaggttaacaatgtcagagttagaagcacctt |
14162269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 14485311 - 14485264
Alignment:
| Q |
154 |
tagggttcttactgacaaggttaataatgtcagaggtagaagcacctt |
201 |
Q |
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| T |
14485311 |
tagggttcttactaacaatgttaacaatgtcagagttagaagcacctt |
14485264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 14144982 - 14144936
Alignment:
| Q |
155 |
agggttcttactgacaaggttaataatgtcagaggtagaagcacctt |
201 |
Q |
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| T |
14144982 |
agggttcttacacacaaggttaacaatgtcagagttagaagcacctt |
14144936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 196
Target Start/End: Complemental strand, 14153036 - 14152923
Alignment:
| Q |
83 |
agatttcaagaatgtatacgccaattcataggtcggtatcattagattgttgaggcttgcagaaagtactgtagggttcttactgacaaggttaataatg |
182 |
Q |
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| T |
14153036 |
agattgcaagaatctgtacaccaattcataggcggggactatttgattgttgaggcttacatacaagactctagggctcttggtgacaatgttaacaatg |
14152937 |
T |
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| Q |
183 |
tcagaggtagaagc |
196 |
Q |
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| T |
14152936 |
tcagaggtagaagc |
14152923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 14165288 - 14165329
Alignment:
| Q |
160 |
tcttactgacaaggttaataatgtcagaggtagaagcacctt |
201 |
Q |
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| T |
14165288 |
tcttagtgacaaggttaacaatgtcagagttagaagcacctt |
14165329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 14481308 - 14481349
Alignment:
| Q |
160 |
tcttactgacaaggttaataatgtcagaggtagaagcacctt |
201 |
Q |
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| T |
14481308 |
tcttacagacaattttaataatgtcagaggtagaagcacctt |
14481349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 14502250 - 14502205
Alignment:
| Q |
156 |
gggttcttactgacaaggttaataatgtcagaggtagaagcacctt |
201 |
Q |
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| T |
14502250 |
gggttcttactcataaagttaacaatgtcagaggtagaagcacctt |
14502205 |
T |
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