View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5088_high_8 (Length: 508)
Name: NF5088_high_8
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 492
Target Start/End: Complemental strand, 29282825 - 29282351
Alignment:
| Q |
18 |
atcttctcatagtaggaaaaattaggatcaaatgagtcatcagaagaaggattgttcaacttgaaggatacaatggtatctgtgctatcaacaaatatca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29282825 |
atcttctcatagtaggaaaaattaggatcaaatgagtcatcagaagaaggattgttcaacttgaaggatacaatggtatctgtgctatcaacaaatatca |
29282726 |
T |
|
| Q |
118 |
ggcctttataaaatacaacatcagtgaaagaaaattcatttgtgtttacacgaatccaaaatgactggcttggtcttttgaaagcgagagaaccaaaatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29282725 |
ggcctttataaaatacaacatcagtgaaagaaaattcatttgtgtttacacgaatccaaaatgactggcttggtcttttgaaagcgagagaaccaaaatt |
29282626 |
T |
|
| Q |
218 |
gtaaatcactgcaaccacataatcacttgggcttgtaaaggggtcagcagacaaggtaacctttttgagagatttgagaggtggcagactaatgggagct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29282625 |
gtaaatcactgcaaccacataatcacttgggcttgtaaaggggtcagcagacaaggtaacctttttgagagatttgagaggtggcagactaatgggagct |
29282526 |
T |
|
| Q |
318 |
accctactcttaaaaggattcaccagagttatggcattgctatcttccaccaatgcaagccaaccatggctacagcccaaaaacaatttcattgtattga |
417 |
Q |
| |
|
| |||| ||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
29282525 |
atactacacttaaaaggattcactagagttatggcattgttatcatccaccaatgcaagccaaccatggctacagcctaaacacaatttcattgtattga |
29282426 |
T |
|
| Q |
418 |
tggaaggatgggagaattgaatagggtagtctttcttacttaggatattatacaatgatatcttctttgtctgtg |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29282425 |
tggaaggatgggagaattgaatagggtagtctttcttacttaggatattatacaatgatatcttctttgtctgtg |
29282351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 398
Target Start/End: Complemental strand, 29288282 - 29287896
Alignment:
| Q |
18 |
atcttctcatagtaggaaaaattaggatcaaatgagtcatcagaagaaggattgttcaacttgaaggatacaatggtatctgtgctatcaacaaatatca |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
29288282 |
atcttctcatagtaggcaaaattaggatcaaatgagtcatcagaagaaggattgttcagcttgaaggatacaatggtatctgtgttatcagcaaatatca |
29288183 |
T |
|
| Q |
118 |
ggcctttataaaatacaacatcagtgaaagaaaattcatttgtgtttacacgaatccaaaatgactggcttggtcttttgaaagcgagagaaccaaaatt |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
29288182 |
ggcctttataaaatacaacaccagtgaaagaaaattcatttgtgtttacacgaatccaaaatgattggcttggtcttttgaaagcgagagaactaaaatt |
29288083 |
T |
|
| Q |
218 |
gtaaatcactgcaaccacataatcacttgggcttgtaaaggggtcagcagacaaggtaacctttttgaga------gatttgagaggtggcagactaatg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||| |||| ||||||||| ||||||||| |
|
|
| T |
29288082 |
gtaaatcactgcaaccacataatcacttgggcttgtaatggggtcatcagacaaggtaaccttttcaagagatctggattcgagaggtggtagactaatg |
29287983 |
T |
|
| Q |
312 |
ggagctaccctactcttaaaaggattcaccagagttatggcattgctatcttccaccaatgcaagccaaccatggctacagcccaaa |
398 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||||| |||||| ||| ||||| | ||||||||||||||||||||| |||||| |
|
|
| T |
29287982 |
ggagctatactgctcttaaaaggattcactagagttatagcattgttattatccactagtgcaagccaaccatggctacaacccaaa |
29287896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 29270452 - 29269982
Alignment:
| Q |
18 |
atcttctcatagtaggaaaaattaggatcaaatgagtcatcagaagaaggattgttcaacttgaaggatacaatggtatct-gt--gctatcaacaaata |
114 |
Q |
| |
|
||||||||| ||| | ||||||| |||||| |||||||||| ||| ||||||||| || ||||||||||||||| ||| || ||| || |||||| |
|
|
| T |
29270452 |
atcttctcaaggtaagtaaaattaagatcaattgagtcatcacaaggaggattgtttaatttgaaggatacaatgaagtcttgttcgctgtccgcaaata |
29270353 |
T |
|
| Q |
115 |
tcaggcctttataaaatacaacatcagtgaaagaaaattcatttgtgtttacacgaatccaaaatgactggcttggtcttttgaaagcgagagaaccaaa |
214 |
Q |
| |
|
|| ||||| |||||||||||||| ||||||||||||||||||||||| | ||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
29270352 |
ccaagccttcataaaatacaacattagtgaaagaaaattcatttgtgtctgcacgaatccaaaaagactggcttgctcttttgaaagcgagagaaccaaa |
29270253 |
T |
|
| Q |
215 |
attgtaaatcactgcaaccacataatcacttgggcttgtaaaggggtcagcagacaaggtaacctttttgagagatttgagaggtggcagactaatggga |
314 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| |
|
|
| T |
29270252 |
attgtaaatcgctgcaaccacataatcacttgggcttgtaatggggtcagcagacaaggtaaccttgttgagagattcgagatgtggcagactaatggga |
29270153 |
T |
|
| Q |
315 |
gctaccctactcttaaaaggattcaccagagttatggcattgctatcttccaccaatgcaagccaaccatggctacagcccaaaaacaatttcattgtat |
414 |
Q |
| |
|
|||| || ||||||||||||||||| ||||||||||||||| | | ||||| | ||||||||||||||||||||| || ||| | ||| || || |
|
|
| T |
29270152 |
gctatactgctcttaaaaggattcactagagttatggcattgtttttatccactagtgcaagccaaccatggctacaacctaaacatgttttacttttaa |
29270053 |
T |
|
| Q |
415 |
tgatggaaggatgggagaattgaatagggtagtctttcttacttaggatattatacaatgatatcttcttt |
485 |
Q |
| |
|
|||||||||||||||| || ||||||||||| |||||| |||| ||||| |||| |||||| || ||||| |
|
|
| T |
29270052 |
tgatggaaggatgggataactgaatagggtactctttcgcacttgggatactatataatgatttcatcttt |
29269982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 116 - 280
Target Start/End: Original strand, 28612508 - 28612672
Alignment:
| Q |
116 |
caggcctttataaaatacaacatcagtgaaagaaaattcatttgtgtttacacgaatccaaaatgactggcttggtcttttgaaagcgagagaaccaaaa |
215 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| || ||| ||| ||| ||||||||||||| ||| ||| | |||||||||| ||| ||||| |
|
|
| T |
28612508 |
caggcctttataaaatacaacatcattgaaagaaaactcttttttgtctactcgaatccaaaatggttggtttgctgttttgaaagcaagacgcccaaag |
28612607 |
T |
|
| Q |
216 |
ttgtaaatcactgcaaccacataatcacttgggcttgtaaaggggtcagcagacaaggtaacctt |
280 |
Q |
| |
|
|||||| ||||||| ||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28612608 |
ccgtaaatggctgcaacgacataatcatttgggcttgtaatggggtcagcagacaaggtaacctt |
28612672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 329 - 492
Target Start/End: Complemental strand, 29279541 - 29279375
Alignment:
| Q |
329 |
aaaaggattcaccagagttatggcattgctatcttccaccaatgcaagccaaccatggctacagcc---caaaaacaatttcattgtattgatggaagga |
425 |
Q |
| |
|
|||||||||||| ||||||||| ||||| |||| || || ||||||||||||||||||||||| || |||| ||| ||| || | ||||||||||| |
|
|
| T |
29279541 |
aaaaggattcactagagttatgacattgttatcgtctactaatgcaagccaaccatggctacaaccggccaaacacattttactttcaatgatggaagga |
29279442 |
T |
|
| Q |
426 |
tgggagaattgaatagggtagtctttcttacttaggatattatacaatgatatcttctttgtctgtg |
492 |
Q |
| |
|
||||| |||||||||||||| ||||||| |||||| ||| ||||||| ||| ||||||| ||||||| |
|
|
| T |
29279441 |
tgggataattgaatagggtactctttctcacttagaatactatacaacgatctcttcttcgtctgtg |
29279375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 28621855 - 28621669
Alignment:
| Q |
18 |
atcttctcatagtaggaaaaattaggatcaaatgagtcatcagaagaaggattgttcaacttgaaggatacaatggtat---ctgtgctatcaacaaata |
114 |
Q |
| |
|
|||||||||||||| | ||||||||| ||| ||||||||||| ||| ||||||||| ||||||||||||| ||||| | || || ||| |||||| |
|
|
| T |
28621855 |
atcttctcatagtaagtaaaattagggtcatatgagtcatcacaaggaggattgttgaacttgaaggatataatggcgtctccttcactgtcagcaaata |
28621756 |
T |
|
| Q |
115 |
tcaggcctttataaaatacaacatcagtgaaagaaaattcatttgtgtttacacgaatccaaaatgactggcttggtcttttgaaag |
201 |
Q |
| |
|
|| |||||| ||||||||||||||||||| | ||||| || || || | |||||||||||| ||||||| ||||||||||| |
|
|
| T |
28621755 |
ccaagcctttgtaaaatacaacatcagtgatatcaaattgatgtgctaataaatgaatccaaaatggttggcttgctcttttgaaag |
28621669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 28621667 - 28621613
Alignment:
| Q |
226 |
ctgcaaccacataatcacttgggcttgtaaaggggtcagcagacaaggtaacctt |
280 |
Q |
| |
|
||||||| ||||||||| |||| |||| || |||||||||||||||||||||||| |
|
|
| T |
28621667 |
ctgcaacgacataatcatttggacttgaaatggggtcagcagacaaggtaacctt |
28621613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University