View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5088_low_10 (Length: 410)
Name: NF5088_low_10
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 11 - 373
Target Start/End: Original strand, 2571329 - 2571691
Alignment:
| Q |
11 |
ttatactttctgaatattttcttcaactgaagagtgtttttccataaattaactaaatggtgcttaacaggagaattacaaggaagaggtcactttgatg |
110 |
Q |
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| T |
2571329 |
ttatactttctgaatattttcttcaactgaagagtgtttttccataaattaactaaatggtgcttaacaggagaattacaaggaagaggtcactttgatg |
2571428 |
T |
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| Q |
111 |
gttgagagcggcaggagagctgaaattgaagccctgtactttcatggatatgattatttggggaagtacatagctaagaaaattgtacagtccgattata |
210 |
Q |
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| T |
2571429 |
gttgagagcggcaggagagctgaaattgaagccctgtactttcatggatatgattatttggggaagtacatagctaagaaaattgtacagtccgattata |
2571528 |
T |
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| Q |
211 |
tataatttgtattcaataaacaatagtatagttacaaaataaaaaagccagtgttgtattnnnnnnncggtcttgctaacacgtttcaaacacatattcg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2571529 |
tataatttgtattcaataaacaatagtatagttacaaaataaaaaagccagtgttgtattaaaaaaacggtcttgctaacacgtttcaaacacatattcg |
2571628 |
T |
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| Q |
311 |
ggaatgcaaaactcaaaattttgcacaaccttttaactgtcatttttattgaagaattttgtt |
373 |
Q |
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| T |
2571629 |
ggaatgcaaaactcaaaattttgcacaaccttttaactgtcatttttattgaagaattttgtt |
2571691 |
T |
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