View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5088_low_13 (Length: 345)

Name: NF5088_low_13
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5088_low_13
NF5088_low_13
[»] chr6 (14 HSPs)
chr6 (1-332)||(31289542-31289880)
chr6 (1-230)||(26651948-26652183)
chr6 (1-230)||(26757916-26758151)
chr6 (1-181)||(27421224-27421403)
chr6 (244-331)||(27713873-27713960)
chr6 (244-330)||(26853949-26854035)
chr6 (261-332)||(26631744-26631815)
chr6 (261-332)||(26737719-26737790)
chr6 (244-331)||(26966390-26966477)
chr6 (253-332)||(27422333-27422412)
chr6 (244-332)||(26890735-26890823)
chr6 (244-332)||(27651967-27652055)
chr6 (109-186)||(26632634-26632711)
chr6 (109-186)||(26738610-26738687)
[»] chr8 (1 HSPs)
chr8 (253-334)||(29269748-29269829)
[»] scaffold0003 (2 HSPs)
scaffold0003 (1-181)||(65960-66139)
scaffold0003 (253-332)||(64951-65030)
[»] scaffold0349 (1 HSPs)
scaffold0349 (244-331)||(17984-18071)


Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 31289880 - 31289542
Alignment:
Q  1 tagggaatcctcacaatcgagctggttaggaagtctatctcgtaaaagtctcatactaaacacattcnnnnnnnggcactgatgtgagccatatctctgc 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  31289880 tagggaatcctcacaatcgagccggttaggaagtctatctcgtaaaagtctcatactaaacacattctttttttggcactgatgtgagccatatctctgc 31289781  T
Q  101 actgccttcaataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaatatgttg-------tggcaa 193  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  31289780 actgccttcaataattcatcattgaaatcattgggaaaatgcaaatatcacagatcttgataacaacctttcaccgagaatatgttgcactctctggcaa 31289681  T
Q  194 ccatttatcaacatccagtacaggttgctgcagctgtgtttttacacaagaaactgaactggcagagaagtgtttttacacaagaataccttattaatca 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31289680 ccatttatcaacatccagtacaggttgctgcagctgtgtttttacacaagaaactgaactggcagagaagtgtttttacacaagaataccttattaatca 31289581  T
Q  294 caagagccatacagtgttgtttctgctacacaggttctg 332  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31289580 caagagccatacagtgttgtttctgctacacaggttctg 31289542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 26652183 - 26651948
Alignment:
Q  1 tagggaatcctcacaatcgagctggttaggaagtctatctcgtaaaagtctcatactaaacacattcnnnnnnnggcactgatgtgagccata-tctctg 99  Q
    |||||||||||||||||||||| ||||| ||||||||||| |||| |||| || || |||||||||        |||| |||||||| ||||| ||||||    
T  26652183 tagggaatcctcacaatcgagccggttatgaagtctatcttgtaagagtcccaaaccaaacacatt--ttttttggcaatgatgtgaaccataatctctg 26652086  T
Q  100 cactgccttcaataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaatatgttg-------tggca 192  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||| |||||       |||||    
T  26652085 cactgccttcaataattcatccttgaaatcattggaaaaacgcaaatatcacagatcttcataacatcctttcaccgagaatctgttgcactctctggca 26651986  T
Q  193 accatttatcaacatccagtacaggttgctgcagctgt 230  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  26651985 accatttatcaacatccaatacaggtttctgcagctgt 26651948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 26758151 - 26757916
Alignment:
Q  1 tagggaatcctcacaatcgagctggttaggaagtctatctcgtaaaagtctcatactaaacacattcnnnnnnnggcactgatgtgagccata-tctctg 99  Q
    |||||||||||||||||||||| ||||| ||||||||||| |||| |||| || || |||||||||        |||| |||||||| ||||| ||||||    
T  26758151 tagggaatcctcacaatcgagccggttatgaagtctatcttgtaagagtcccaaaccaaacacatt--ttttttggcaatgatgtgaaccataatctctg 26758054  T
Q  100 cactgccttcaataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaatatgttg-------tggca 192  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||| |||||       |||||    
T  26758053 cactgccttcaataattcatccttgaaatcattggaaaaacgcaaatatcacagatcttcataacatcctttcaccgagaatctgttgcactctctggca 26757954  T
Q  193 accatttatcaacatccagtacaggttgctgcagctgt 230  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  26757953 accatttatcaacatccaatacaggtttctgcagctgt 26757916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 27421224 - 27421403
Alignment:
Q  1 tagggaatcctcacaatcgagctggttaggaagtctatctcgtaaaagtctcatactaaacacattcnnnnnnnggcactgatgtgagccata-tctctg 99  Q
    |||||||||||||||||||||| |||||||||| |||||| |||| ||||||  || | |||||  |        |||||||||||||||||| ||| ||    
T  27421224 tagggaatcctcacaatcgagccggttaggaagcctatcttgtaagagtctccaaccatacacaa-ctttttttagcactgatgtgagccataatctatg 27421322  T
Q  100 cactgccttcaataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaat 181  Q
    ||||||||||||||||||||| | ||||||||| | ||||||||||| |||||| ||||||||||| |||||| | ||||||    
T  27421323 cactgccttcaataattcatcgtcgaaatcatt-gaaaaacgcaaatttcacagctcttgataacatcctttctctgagaat 27421403  T

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Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 244 - 331
Target Start/End: Original strand, 27713873 - 27713960
Alignment:
Q  244 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttct 331  Q
    |||||||  ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||||| |||||    
T  27713873 aaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttct 27713960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 244 - 330
Target Start/End: Complemental strand, 26854035 - 26853949
Alignment:
Q  244 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttc 330  Q
    |||||||  ||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||    
T  26854035 aaactgacttggcagaaaattgtttttacacaagaataacttattaatcacaagagccatacagtgttgttgctgctacacaagttc 26853949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 261 - 332
Target Start/End: Complemental strand, 26631815 - 26631744
Alignment:
Q  261 aagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||| ||||||    
T  26631815 aagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgcagctacacaagttctg 26631744  T

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Target: chr6; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 261 - 332
Target Start/End: Complemental strand, 26737790 - 26737719
Alignment:
Q  261 aagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||| ||||||    
T  26737790 aagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgcagctacacaagttctg 26737719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 244 - 331
Target Start/End: Complemental strand, 26966477 - 26966390
Alignment:
Q  244 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttct 331  Q
    |||||||  ||||||  |||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| |||||    
T  26966477 aaactgatttggcagcaaagtgtttttacacaagaataccttattaatctcaagagccatacagttttgttgctgctacacaagttct 26966390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 253 - 332
Target Start/End: Original strand, 27422333 - 27422412
Alignment:
Q  253 tggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 332  Q
    ||||||| || || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||    
T  27422333 tggcagaaaactgcttttacacaagaataccttattaattacaagagccatacagtgttgtttctgctactcaagttctg 27422412  T

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Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 26890823 - 26890735
Alignment:
Q  244 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 332  Q
    |||||||  ||||||| ||||||||||||| ||||||| ||||||||||||||||||||| | |||||||| |||  ||||| ||||||    
T  26890823 aaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaagttctg 26890735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 332
Target Start/End: Original strand, 27651967 - 27652055
Alignment:
Q  244 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 332  Q
    |||||||  ||||||| ||||||||||||||| ||||| |||||||||||||| ||  ||||||||||||| ||||||| || ||||||    
T  27651967 aaactgatttggcagaaaagtgtttttacacatgaataacttattaatcacaaaagttatacagtgttgttgctgctacgcaagttctg 27652055  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 26632711 - 26632634
Alignment:
Q  109 caataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaatatgtt 186  Q
    |||||||||||||| |||||||| | |||||   |||| ||||   ||||||||||| ||||||||||||||| ||||    
T  26632711 caataattcatcatcgaaatcatcgtgaaaaacaaaatttcactactcttgataacatcctttcaccgagaatctgtt 26632634  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 26738687 - 26738610
Alignment:
Q  109 caataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaatatgtt 186  Q
    |||||||||||||| |||||||| | |||||   |||| ||||   ||||||||||| ||||||||||||||| ||||    
T  26738687 caataattcatcatcgaaatcatcgtgaaaaacaaaatttcactactcttgataacatcctttcaccgagaatctgtt 26738610  T

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Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 253 - 334
Target Start/End: Original strand, 29269748 - 29269829
Alignment:
Q  253 tggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctgct 334  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| ||||||||    
T  29269748 tggcagagaagtgtttttacacaagaataacttaataatcacaagagccatacagtgttgttgctgctacacaagttctgct 29269829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 66139 - 65960
Alignment:
Q  1 tagggaatcctcacaatcgagctggttaggaagtctatctcgtaaaagtctcatactaaacacattcnnnnnnnggcactgatgtgagccata-tctctg 99  Q
    |||||||||||||||||||||| |||||||||| |||||| |||| ||||||  || | |||||  |        |||||||||||||||||| ||| ||    
T  66139 tagggaatcctcacaatcgagccggttaggaagcctatcttgtaagagtctccaaccatacacaa-ctttttttagcactgatgtgagccataatctatg 66041  T
Q  100 cactgccttcaataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaat 181  Q
    ||||||||||||||||||||| | ||||||||| | ||||||||||| |||||| ||||||||||| |||||| | ||||||    
T  66040 cactgccttcaataattcatcgtcgaaatcatt-gaaaaacgcaaatttcacagctcttgataacatcctttctctgagaat 65960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 253 - 332
Target Start/End: Complemental strand, 65030 - 64951
Alignment:
Q  253 tggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 332  Q
    ||||||| || || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||    
T  65030 tggcagaaaactgcttttacacaagaataccttattaattacaagagccatacagtgttgtttctgctactcaagttctg 64951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 244 - 331
Target Start/End: Complemental strand, 18071 - 17984
Alignment:
Q  244 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttct 331  Q
    |||||||  ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||||| |||||    
T  18071 aaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttct 17984  T

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