View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5088_low_14 (Length: 344)
Name: NF5088_low_14
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 45389991 - 45389669
Alignment:
| Q |
1 |
caagataaaatatggtgttgatatatatttcaacacatattgtggaaagaagcactgcatgaaacatgaaatatgtcagaatcttgtacaatcttcctga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45389991 |
caagataaaatatggtgttgatatatatttcaacacatattgtggaaagaagcactgcatgaaacatgaaatatgtcagaatcttgtacaatcttcctga |
45389892 |
T |
|
| Q |
101 |
gctaatgatgaaagttcatggaaacataccaggtctggataagaagacatggcactggtgcagtttttatccaggttctgtactgacccctgttacacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45389891 |
gctaatgatgaaagttcatggaaacataccaggtctggataagaagacattgcactggtgcagtttttattcaggttctgtactgacccctgttacacaa |
45389792 |
T |
|
| Q |
201 |
gacaaaactatgtcaagtaagcctgtttactgttacccgcttttctttctcttatgcaatttgaaaaattcaatatagggaatagcatgtggattccttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45389791 |
gacaaaactatgtcaagtaagcctgtttactgttacccgcttttctttctcttatgcaatttgaaaaattcaatatagggaatagcatgtggattctttt |
45389692 |
T |
|
| Q |
301 |
ctctatttcataagatattgaag |
323 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
45389691 |
ctctatttcataagatattgaag |
45389669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 45374833 - 45374512
Alignment:
| Q |
1 |
caagataaaatatggtgttgatatatatttcaacacatattgtggaaagaagcactgcatgaaacatgaaatatgtcagaatcttgtacaatcttcctga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
45374833 |
caagataaaatatggtgttgatatatatttcaacacatattgtggaaagaagcactgcatgaaacacgaaatatgtcagaatcttgtacaatcatcctga |
45374734 |
T |
|
| Q |
101 |
gctaatgatgaaagttcatggaaacataccaggtctggataagaagacatggcactggtgcagtttttatccaggttctgtactgacccctgttacacaa |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||| ||||||| || |||||||||||||||||||||||||| |
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| T |
45374733 |
gctaatgatgaaagttcatggaaacatactaggtctggataagaaggcatcgcactggtgcaatttttattcaagttctgtactgacccctgttacacaa |
45374634 |
T |
|
| Q |
201 |
gacaaaactatgtcaagtaagcctgtttactgttacccgcttttctttctcttatgcaatttgaaaaattcaatatagggaatagcatgtggattccttt |
300 |
Q |
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||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45374633 |
gacaaaactatgtcaagtaagcccgtttactgttgcccacttttctttctcttatgcaatttgaaaaattcaatatagggaatagcatgtggcttccttt |
45374534 |
T |
|
| Q |
301 |
ctctatttcataagatattgaa |
322 |
Q |
| |
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|||||||||||| ||||||||| |
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| T |
45374533 |
ctctatttcataggatattgaa |
45374512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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