View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5088_low_16 (Length: 313)
Name: NF5088_low_16
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 30 - 298
Target Start/End: Complemental strand, 2503502 - 2503224
Alignment:
| Q |
30 |
catagataataagtgttacattacattgaattaaattaaatta----------gtacaatacattttacatacacagaaaaagatctgattcttccttca |
119 |
Q |
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| T |
2503502 |
catagataataagtgttacattacattgaattaaattaaattaaattaaattagtacaatacattttacatacacagaaaaagatctgattcttccttca |
2503403 |
T |
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| Q |
120 |
ctttattggaaagaagagctttacagttttacactaccaaggtaaacaaagaaaagaggcattcaacaaaagaaagagcttttccttcatcttaacagtt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2503402 |
ctttattggaaagaagagctttacagttttacactaccaaggtaaacaaagaaaagaggcattcaacaaaagaaagagcttttccttcatcttaacagtt |
2503303 |
T |
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| Q |
220 |
ctactcatgctacataaatgcccccatccattactgtctactttgactatttctctccactttgcaaagtgcaaaatct |
298 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2503302 |
ctactcatgctacatacatgcccccatccattactgtctactttgactatttctctccactttgcaaagtgcaaaatct |
2503224 |
T |
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