View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5088_low_17 (Length: 312)
Name: NF5088_low_17
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 9 - 295
Target Start/End: Complemental strand, 37462950 - 37462665
Alignment:
| Q |
9 |
agcacagaggaaaacattttagttaaaataatttacatcgagcatatataacatgattagtctaaagacaaaattaaaaaatttacctgatcccctagtg |
108 |
Q |
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| T |
37462950 |
agcacaaaggaaaacattttagttaaaataatttacatcgagcatatataacatgattagtctaa-gacaaaattaaaaaatttacctgatcccctagtg |
37462852 |
T |
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| Q |
109 |
atggaataccttggtgaacaatccattgagcatcaacaactccaattttctcatgggcaggctatataatatatggcataaagaattaattcaaagttcc |
208 |
Q |
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| T |
37462851 |
atggaataccttggtgaacaatccattgagcatcaacaactccaattttctcatgggcaggctatataatatataacatatagaattaattcaaagttcc |
37462752 |
T |
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| Q |
209 |
acagcatatcacaattacattatatcaaaagagaaagattcattaattacctcgacgcattttctaaaagcaaaatcaagaccccat |
295 |
Q |
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| T |
37462751 |
acagcatatcacaattacattatatcaaaagagaaagattcattaattacctcgacgcattttctaaaagcaaaatcaagaccccat |
37462665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 172
Target Start/End: Complemental strand, 37457135 - 37457054
Alignment:
| Q |
91 |
ttacctgatcccctagtgatggaataccttggtgaacaatccattgagcatcaacaactccaattttctcatgggcaggcta |
172 |
Q |
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| T |
37457135 |
ttacctgattccctagcgagggaatactttgatgaataatccactgagtatcaacaactcctatcttctcataggccggcta |
37457054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 39263596 - 39263506
Alignment:
| Q |
85 |
aaaaatttacctgatcccctagtgatggaataccttggtgaacaatccattgagcatcaacaactccaattttctcatgggcaggctatat |
175 |
Q |
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| T |
39263596 |
aaaaatttacctgatttcctagtgtgggaacaccttggtgaacaatccattgagcatcgacaactccaatcttctcatgtgcaggctatat |
39263506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 11893737 - 11893667
Alignment:
| Q |
105 |
agtgatggaataccttggtgaacaatccattgagcatcaacaactccaattttctcatgggcaggctatat |
175 |
Q |
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| T |
11893737 |
agtgaaggaacactttggtggacaacccattgtgcatcaacaactcctattttctcatgagcaggctatat |
11893667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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