View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5088_low_20 (Length: 286)
Name: NF5088_low_20
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088_low_20 |
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| [»] scaffold0112 (3 HSPs) |
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| [»] scaffold0759 (1 HSPs) |
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| [»] scaffold0416 (1 HSPs) |
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| [»] scaffold0093 (1 HSPs) |
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| [»] scaffold0233 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 26 - 270
Target Start/End: Complemental strand, 26792293 - 26792045
Alignment:
| Q |
26 |
ttttcattagaattagaggccatcacccgtatagtcaatgcaggtcattccaaatatatacaaactgacacactgacacgttatggagttgccgcatgga |
125 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26792293 |
ttttcattagagttagaggccatcacccgtatagtcaatgcaggacattccaaatatgtacaaactgacacactgacacgttatggaattgccgcatgga |
26792194 |
T |
|
| Q |
126 |
ttcgactcaaatactgcacaaggcataccatatcttgcacaatgccttgcttcaacgttcttcg----tctggatgattactgcaaatggtaaaggaagt |
221 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | |
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| T |
26792193 |
ttcgactcaaatactgcacaaggcataccatatcttgcacaatgccttgcttcaacgttcttcgtctgtctggatgattactgcaaatggcaaaggaaat |
26792094 |
T |
|
| Q |
222 |
taaagttggaaccaatacacatatctatgcatataacgtatatatttag |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26792093 |
taaagttggaaccaatacacatatctatgcatataacgtatatatttag |
26792045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 175 - 270
Target Start/End: Complemental strand, 26834738 - 26834645
Alignment:
| Q |
175 |
cttcaacgttcttcgtctggatgattactgcaaatggtaaaggaagttaaagttggaaccaatacacatatctatgcatataacgtatatatttag |
270 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26834738 |
cttcaacgttcttcgtctggacgattactgcaaatggcaaagaaagttaaagttggaaccaatacac--atctatgcatataacgtatatatttag |
26834645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 173 - 270
Target Start/End: Original strand, 26777766 - 26777861
Alignment:
| Q |
173 |
tgcttcaacgttcttcgtctggatgattactgcaaatggtaaaggaagttaaagttggaaccaatacacatatctatgcatataacgtatatatttag |
270 |
Q |
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|||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
26777766 |
tgcttctacgttcttcgtctggacgattactgcaaatggcaaaggaagttaaagttgaaaccaatacac--atctatgcatataacgtatatatttag |
26777861 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 270
Target Start/End: Complemental strand, 26729547 - 26729452
Alignment:
| Q |
174 |
gcttcaacgttcttcgtctggatgattactgcaaatggtaaaggaagttaaagttggaaccaatacacatatctatgcatataacgtatatatttag |
270 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||||||| | ||| ||| |||||||||| | |||||||||| |
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|
| T |
26729547 |
gcttcaacgttcttcgtctggacgattactgcaaatgacaaaggaaattaaaattggaaccaa-atacacatccatgcatataaagcatatatttag |
26729452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 26745686 - 26745629
Alignment:
| Q |
168 |
tgccttgcttcaacgttcttcgtctggatgattactgcaaatggtaaaggaagttaaa |
225 |
Q |
| |
|
|||| ||||| ||||||||||||||||| |||||||||||| || ||||||||||||| |
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| T |
26745686 |
tgccctgcttgaacgttcttcgtctggacgattactgcaaagggcaaaggaagttaaa |
26745629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 270
Target Start/End: Original strand, 25805 - 26057
Alignment:
| Q |
10 |
catcatcaagtactccttttcattagaattagaggccatcacccgtatagtcaatgcaggtcattccaaatatatacaaactgacacactgacacgttat |
109 |
Q |
| |
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|||| |||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||| | |||||||||||| ||||||||||| |
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| T |
25805 |
catcttcaagtactccttttcattagagttagaggccatctg--gtactc-caatgcaggtcattccaaatatttgcaaactgacacattgacacgttat |
25901 |
T |
|
| Q |
110 |
ggagttgccgcatggattcgactcaaatactgcacaaggcataccatatcttgcacaatgccttgcttcaacgttcttcgtctggatgattactgcaaat |
209 |
Q |
| |
|
||||||||||||||||||| ||||||||| || |||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25902 |
ggagttgccgcatggattcaactcaaatattgaacaacgcataccgtatcttgcacaat---atgcttcaacgttcttcgtctggatgattactgcaaat |
25998 |
T |
|
| Q |
210 |
ggtaaaggaagttaaagttggaaccaatacacatatctatgcatataacgtatatatttag |
270 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
25999 |
ggcaaaggaagttaaagttggaaccaatacac--atctatgcatataacgtacatatttag |
26057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 10 - 270
Target Start/End: Original strand, 40945 - 41203
Alignment:
| Q |
10 |
catcatcaagtactccttttcattagaattagaggccatcacccgtatagtcaatgcaggtcattccaaatatatacaaactgacacactgacacgttat |
109 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| |||||| || || |||| |||||| |||||||| | |
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|
| T |
40945 |
catcttcaagtactccatttcattagaattagaggccatcacccctatagtcaacgcaggtacttccaactaaatgcaaatagacacaacgacacgttgt |
41044 |
T |
|
| Q |
110 |
ggagttgccgcatggattcgactcaaatac--tgcacaaggcataccatatcttgcacaatgccttgcttcaacgttcttcgtctggatgattactgcaa |
207 |
Q |
| |
|
| || ||||||||||||| || |||| | || ||||| |||||| | ||||||| |||| ||||||||||||||| |||| | |||||||||| |
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| T |
41045 |
gatgtcgccgcatggattccac--aaatcccgtgaacaagccataccgacttttgcacattgccctgcttcaacgttcttaatctgaacaattactgcaa |
41142 |
T |
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| Q |
208 |
atggtaaaggaagttaaagttggaaccaatacacatatctatgcatataacgtatatatttag |
270 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
41143 |
atggcaaaggaagttaaagttgaaaccaatacac--atctatgcatataacgtatatatttag |
41203 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 17285 - 17337
Alignment:
| Q |
173 |
tgcttcaacgttcttcgtctggatgattactgcaaatggtaaaggaagttaaa |
225 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| || ||||||||||||| |
|
|
| T |
17285 |
tgcttcaacgttcttcgtctgaatgattactgcaaagggcaaaggaagttaaa |
17337 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0759 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: scaffold0759
Description:
Target: scaffold0759; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 26 - 270
Target Start/End: Complemental strand, 2460 - 2234
Alignment:
| Q |
26 |
ttttcattagaattagaggccatcacccgtatagtcaatgcaggtcattccaaatatatacaaactgacacactgacacgttatggagttgccgcatgga |
125 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
2460 |
ttttcattagagttagaggccatcacccgtatagtcaatgcagatcattccaaatatattaga----------------gttatggagttgccgcatgga |
2377 |
T |
|
| Q |
126 |
ttcgactcaaatactgcacaaggcataccatatcttgcacaatgccttgcttcaacgttcttcgtctggatgattactgcaaatggtaaaggaagttaaa |
225 |
Q |
| |
|
||||||||||||| || |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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|
| T |
2376 |
ttcgactcaaatattgaacaatccctaccatatcttgcacaatgccttgcttcaacgttcttcgtctggatgattactacaaatggcaaaggaagttaaa |
2277 |
T |
|
| Q |
226 |
gttggaaccaatacacatatctatgcatataacgtatatatttag |
270 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
2276 |
gttggaaccgatacac--atctatgcatataacgtatatatttag |
2234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 10 - 270
Target Start/End: Original strand, 7319 - 7579
Alignment:
| Q |
10 |
catcatcaagtactccttttcattagaattagaggccatcacccgtatagtcaatgcaggtcattccaaatatatacaaactgacacactgacacgttat |
109 |
Q |
| |
|
|||| ||||||| || ||||||||||| ||||||||||||||||||||||||||||||||| |||||| || || |||| |||||| ||||||||| |
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|
| T |
7319 |
catcttcaagtagtctttttcattagagttagaggccatcacccgtatagtcaatgcaggtacttccaactaaatgcaaatggacacaacgacacgttac |
7418 |
T |
|
| Q |
110 |
ggagttgccgcatggattcgactcaaatac---tgcacaaggcataccatatcttgcacaatgccttgcttcaacgttcttcgtctggatgattactgca |
206 |
Q |
| |
|
| || |||||||||||||| | ||| | || |||| ||||||| ||||||||| |||| ||||||||||||||| |||||| ||||||||| |
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|
| T |
7419 |
gatgtcgccgcatggattcggc---aatgcccgtgaacaacgcataccgactcttgcacattgccctgcttcaacgttcttaatctggacaattactgca |
7515 |
T |
|
| Q |
207 |
aatggtaaaggaagttaaagttggaaccaatacacatatctatgcatataacgtatatatttag |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7516 |
aatggtaaaggaagttaaagttggaaccaatacacatatctatgcatataacgtatatatttag |
7579 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 153 - 265
Target Start/End: Original strand, 13042066 - 13042176
Alignment:
| Q |
153 |
ccatatcttgcacaatgccttgcttcaacgttcttcgtctggatgattactgcaaatggtaaaggaagttaaagttggaaccaatacacatatctatgca |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13042066 |
ccatatcttgcacaatgccttgcttcaacgttcttcatctggacgattactgcaaatggcaaaggaagttaaagttggaaccaatacac--atctatgca |
13042163 |
T |
|
| Q |
253 |
tataacgtatata |
265 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
13042164 |
tataacctatata |
13042176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 153 - 265
Target Start/End: Original strand, 13050143 - 13050253
Alignment:
| Q |
153 |
ccatatcttgcacaatgccttgcttcaacgttcttcgtctggatgattactgcaaatggtaaaggaagttaaagttggaaccaatacacatatctatgca |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13050143 |
ccatatcttgcacaatgccttgcttcaacgttcttcatctggacgattactgcaaatggcaaaggaagttaaagttggaaccaatacac--atctatgca |
13050240 |
T |
|
| Q |
253 |
tataacgtatata |
265 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
13050241 |
tataacctatata |
13050253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 169 - 270
Target Start/End: Complemental strand, 21093 - 20994
Alignment:
| Q |
169 |
gccttgcttcaacgttcttcgtctggatgattactgcaaatggtaaaggaagttaaagttggaaccaatacacatatctatgcatataacgtatatattt |
268 |
Q |
| |
|
|||||||||||| |||| |||||| || ||||||||||||| | |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21093 |
gccttgcttcaatgttcatcgtctcgacgattactgcaaattgcaaagaaagttaaagttggaaccaat--acatatctatgcatataacgtatatattt |
20996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0233 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0233
Description:
Target: scaffold0233; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 17690 - 17635
Alignment:
| Q |
213 |
aaaggaagttaaagttggaaccaatacacatatctatgcatataacgtatatatttag |
270 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17690 |
aaaggaagttaaagttggaatcaatacacat--ctatgcatataacgtatatatttag |
17635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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