View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5088_low_21 (Length: 267)
Name: NF5088_low_21
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 8344752 - 8344650
Alignment:
| Q |
1 |
accagatccaccattcccaccacctatacctccactgccagatcctccaattccatcaccataaccaccacctattcctccactaccagaccctccaaaa |
100 |
Q |
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| T |
8344752 |
accagatccaccattcccaccacctatacctccactgctagatcctccaattccatcaccataaccaccacctattcctccaccaccagaccctccaaaa |
8344653 |
T |
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| Q |
101 |
cta |
103 |
Q |
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||| |
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| T |
8344652 |
cta |
8344650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 8344573 - 8344509
Alignment:
| Q |
180 |
gactatttccggggttattttcacctccaactacacccccagaaccaggtcctacaccaactcca |
244 |
Q |
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| T |
8344573 |
gactatttccggggttatatccacctccaactacacccccagaaccaggtcctacaccaactcca |
8344509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 8344943 - 8344878
Alignment:
| Q |
8 |
ccaccattcccaccacctatacctccactgccagatcctccaattccatcaccataaccaccacct |
73 |
Q |
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| T |
8344943 |
ccaccatatccaccacctatacctccgccgccagatcctccatttccattactataaccaccacct |
8344878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 8344802 - 8344747
Alignment:
| Q |
35 |
ctgccagatcctccaattccatcaccataaccaccacctattcctccactaccaga |
90 |
Q |
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|||||| |||||||| ||||| |||||||||||||||||||| |||||| |||||| |
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| T |
8344802 |
ctgccaaatcctccatttccaccaccataaccaccacctattgctccaccaccaga |
8344747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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