View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5088_low_22 (Length: 264)
Name: NF5088_low_22
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 82 - 254
Target Start/End: Original strand, 32393745 - 32393916
Alignment:
| Q |
82 |
taactattaactatctggctatgcgggcccc-tgagagccatgatgacatgctatgatggcacattaattttgtgaaattatttgggtgaataaaattag |
180 |
Q |
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| T |
32393745 |
taactatcaactatctggctatgcgggccccctgagagccatgatgacatgctatgatggcacattaattttgtgaaattatttgggtgaataaaattac |
32393844 |
T |
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| Q |
181 |
atatatcagagagtgtcctttcttccactcttttccaaacttgacaaattggaatgtggtaagcatggtctgtg |
254 |
Q |
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| T |
32393845 |
atatatc--agagtgtcctttcttccactcttttccaaacttgacaaattggaatgtggtaagcatggtctgtg |
32393916 |
T |
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Target: chr6; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 32393377 - 32393455
Alignment:
| Q |
1 |
cttggtgggtgatgtgtagcactaaatagcaatcttcaagctgaccaaattaattgttggcaagaaatatgcttattcat |
80 |
Q |
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| T |
32393377 |
cttggtgggtgatgtgtagcactaaatagcaatcttcaagctgacc-aattaattgttggcaagaaatatgcttattcat |
32393455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 26162600 - 26162783
Alignment:
| Q |
1 |
cttggtgggtgatgtgtagcactaaatagcaatcttcaagctgaccaaattaattgttggcaagaaatatgcttattcatctaactattaactatctggc |
100 |
Q |
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| T |
26162600 |
cttggtgggtgatgtgtaacactaaatagcaatcttcaagatgaccaa-ttaattgttggcaggaaatatgtttatccatctaactatcaacaatctggc |
26162698 |
T |
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| Q |
101 |
tatgcgggcccctgagagccatgatgac-atgctatgatggcac-attaattttgtgaaattatttgggtgaataaaattagatat |
184 |
Q |
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| T |
26162699 |
tatgtgggatcctgagagccatgatgacaatgc-ctgatggcacaattaattttgtgaaatgatttgggtgaataaaattacatat |
26162783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 26163085 - 26163142
Alignment:
| Q |
195 |
gtcctttcttccactcttttccaaacttgacaaattggaatgtggtaagcatggtctg |
252 |
Q |
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| T |
26163085 |
gtcctttcttccactctttttcaaacttgacaaattggagtgtggtaagcatggtctg |
26163142 |
T |
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