View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5088_low_23 (Length: 251)

Name: NF5088_low_23
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5088_low_23
NF5088_low_23
[»] chr7 (4 HSPs)
chr7 (1-240)||(43814299-43814538)
chr7 (28-124)||(5519460-5519556)
chr7 (96-141)||(32155559-32155604)
chr7 (22-139)||(29482687-29482803)
[»] chr3 (6 HSPs)
chr3 (19-148)||(35223308-35223437)
chr3 (29-81)||(38999954-39000006)
chr3 (26-93)||(22745288-22745355)
chr3 (158-198)||(17118339-17118379)
chr3 (19-63)||(30915845-30915888)
chr3 (196-232)||(34251075-34251111)
[»] chr8 (2 HSPs)
chr8 (21-125)||(24391289-24391393)
chr8 (90-137)||(14958061-14958108)
[»] chr1 (5 HSPs)
chr1 (37-80)||(42517497-42517540)
chr1 (158-230)||(41941055-41941124)
chr1 (157-186)||(6397795-6397824)
chr1 (32-69)||(45723300-45723337)
chr1 (32-96)||(24173353-24173416)
[»] scaffold0035 (1 HSPs)
scaffold0035 (21-149)||(24446-24574)
[»] chr6 (2 HSPs)
chr6 (19-149)||(10383924-10384054)
chr6 (104-134)||(14286447-14286477)
[»] chr2 (5 HSPs)
chr2 (19-88)||(16069694-16069763)
chr2 (158-195)||(31395293-31395330)
chr2 (34-93)||(31846347-31846406)
chr2 (39-81)||(16563229-16563271)
chr2 (28-69)||(16069627-16069668)
[»] chr5 (2 HSPs)
chr5 (46-149)||(7237091-7237192)
chr5 (108-149)||(16630237-16630278)
[»] chr4 (1 HSPs)
chr4 (22-96)||(36010319-36010394)


Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 43814299 - 43814538
Alignment:
Q  1 atagtttagagttgttagaacaactagtaacagaagattaaagtaaacgaaagtaaaagacaatggacacaatcgatcttttttaacgtagttcggccag 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43814299 atagtttagagttgttagaacaacaagtaacagaagattaaagtaaacgaaagtaaaagacaatggacacaatcgatcttttttaacgtagttcggccag 43814398  T
Q  101 ttgtgcctacctctgcgactatagagaagttatagttccgtttgtattaattagggaggtttcagtgttacaagcaatatatatagcactactactactg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43814399 ttgtgcctacctctgcgactatagagaagttatagttccgtttgtattaattagggaggtttcagtgttacaagcaatatatatagcactactactactg 43814498  T
Q  201 cgattcaggttacaacaatacccctgaaccatctgccttt 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43814499 cgattcaggttacaacaatacccctgaaccatctgccttt 43814538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 5519556 - 5519460
Alignment:
Q  28 taacagaagattaaagtaaacgaaagtaaaagacaatggacacaatcgatcttttttaacgtagttcggccagttgtgcctacctctgcgactatag 124  Q
    |||||||||||||| ||||| ||||||| |||| ||||||||| |||||||||| |||||| |||||| ||| | ||| |||||||||| |||||||    
T  5519556 taacagaagattaatgtaaatgaaagtataagataatggacacgatcgatctttgttaacgcagttcgaccaatggtgtctacctctgcaactatag 5519460  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 32155604 - 32155559
Alignment:
Q  96 gccagttgtgcctacctctgcgactatagagaagttatagttccgt 141  Q
    |||| |||||||||||||||| ||||||||| ||||||||||||||    
T  32155604 gccaattgtgcctacctctgccactatagagcagttatagttccgt 32155559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 29482803 - 29482687
Alignment:
Q  22 aactagtaacagaagattaaagtaaacgaaagtaaaagacaatggacacaatcgatcttttttaacgtagttcggccagttgtgcctacctctgcgacta 121  Q
    |||||||||| |||||||| || |||| ||| |||||||||||  || | |||||||||| |||  | | |||| ||| | |||||||||| |||||| |    
T  29482803 aactagtaaccgaagattagag-aaacaaaaataaaagacaataaactcgatcgatctttattactgcaattcgaccaatggtgcctacctttgcgacaa 29482705  T
Q  122 tagagaagttatagttcc 139  Q
    ||||| | ||||||||||    
T  29482704 tagagcatttatagttcc 29482687  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 35223308 - 35223437
Alignment:
Q  19 aacaactagtaacagaagattaaagtaaacgaaagtaaaagacaatggacacaatcgatcttttttaacgtagttcggccagttgtgcctacctctgcga 118  Q
    |||||| || |||||||||||||||||||| ||||||||||| ||||||||  | ||||| || ||||| || || ||||| | ||||||| ||||||||    
T  35223308 aacaaccagcaacagaagattaaagtaaacaaaagtaaaagaaaatggacatgaacgatccttgttaacataatttggccaatggtgcctatctctgcga 35223407  T
Q  119 ctatagagaagttatagttccgtttgtatt 148  Q
    |||||||| || ||||||||||||| ||||    
T  35223408 ctatagagcagctatagttccgtttatatt 35223437  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 38999954 - 39000006
Alignment:
Q  29 aacagaagattaaagtaaacgaaagtaaaagacaatggacacaatcgatcttt 81  Q
    ||||||||||||||||||  |||||||||||||||| ||||| ||||||||||    
T  38999954 aacagaagattaaagtaagtgaaagtaaaagacaatagacacgatcgatcttt 39000006  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 22745288 - 22745355
Alignment:
Q  26 agtaacagaagattaaagtaaacgaaagtaaaagacaatggacacaatcgatcttttttaacgtagtt 93  Q
    ||||||| |||||||||| ||  |||||||||||||||||||||| ||| |||||| |||||| ||||    
T  22745288 agtaacataagattaaagaaagggaaagtaaaagacaatggacacgatcaatctttgttaacgcagtt 22745355  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 17118339 - 17118379
Alignment:
Q  158 ggtttcagtgttacaagcaatatatatagcactactactac 198  Q
    ||||||||||||||| |||||||||||||||||| ||||||    
T  17118339 ggtttcagtgttacaggcaatatatatagcactattactac 17118379  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 30915845 - 30915888
Alignment:
Q  19 aacaactagtaacagaagattaaagtaaacgaaagtaaaagacaa 63  Q
    |||||||||||| |||||||||||| |||||||||||||| ||||    
T  30915845 aacaactagtaatagaagattaaag-aaacgaaagtaaaaaacaa 30915888  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 34251075 - 34251111
Alignment:
Q  196 tactgcgattcaggttacaacaatacccctgaaccat 232  Q
    |||| |||||||| |||||||||||||||||||||||    
T  34251075 tactacgattcagattacaacaatacccctgaaccat 34251111  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 24391289 - 24391393
Alignment:
Q  21 caactagtaacagaagattaaagtaaacgaaagtaaaagacaatggacacaatcgatcttttttaacgtagttcggccagttgtgcctacctctgcgact 120  Q
    ||||||||| ||||||||||||||||| |||||||||| |||||||||||||| ||| ||| || | |||||||||||| |  ||| ||||||| ||| |    
T  24391289 caactagtagcagaagattaaagtaaatgaaagtaaaaaacaatggacacaatagatatttgttgatgtagttcggccaatgatgcatacctctacgatt 24391388  T
Q  121 ataga 125  Q
    |||||    
T  24391389 ataga 24391393  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 14958108 - 14958061
Alignment:
Q  90 agttcggccagttgtgcctacctctgcgactatagagaagttatagtt 137  Q
    |||||||||| |||||||||||||||||| ||||||| || |||||||    
T  14958108 agttcggccaattgtgcctacctctgcgattatagagcagctatagtt 14958061  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 42517540 - 42517497
Alignment:
Q  37 attaaagtaaacgaaagtaaaagacaatggacacaatcgatctt 80  Q
    |||||||||||||||| ||||||||||||||||| |||||||||    
T  42517540 attaaagtaaacgaaaataaaagacaatggacacgatcgatctt 42517497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 41941124 - 41941055
Alignment:
Q  158 ggtttcagtgttacaagcaatatatatagcactactactactgcgattcaggttacaacaatacccctgaacc 230  Q
    ||||||| ||||||||| ||||||||||   ||||||||||| |||||||| |||||| | ||||||| ||||    
T  41941124 ggtttcaatgttacaagtaatatatata---ctactactactacgattcagtttacaatattacccctaaacc 41941055  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 186
Target Start/End: Original strand, 6397795 - 6397824
Alignment:
Q  157 aggtttcagtgttacaagcaatatatatag 186  Q
    ||||||||||||||||||||||||||||||    
T  6397795 aggtttcagtgttacaagcaatatatatag 6397824  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 45723300 - 45723337
Alignment:
Q  32 agaagattaaagtaaacgaaagtaaaagacaatggaca 69  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  45723300 agaagattaaagtaaacgaaaataaaagataatggaca 45723337  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 24173416 - 24173353
Alignment:
Q  32 agaagattaaagtaaacgaaagtaaaagacaatggacacaatcgatcttttttaacgtagttcgg 96  Q
    |||||||||||| |||||| || ||||||||||| |||||||  ||||||||| || ||||||||    
T  24173416 agaagattaaag-aaacgatagcaaaagacaatgaacacaattaatcttttttcacttagttcgg 24173353  T

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Target: scaffold0035 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 24574 - 24446
Alignment:
Q  21 caactagtaacagaagattaaagta---aacgaaagtaaaagacaatggacacaatcgatcttttttaacgtagttcggccagttgtgcctacctctgcg 117  Q
    ||||| ||||||||||||||||  |   ||| |||||||||||||||| | |||  ||||||| || ||  || |||||||| || ||||||||||||||    
T  24574 caactggtaacagaagattaaataagagaacaaaagtaaaagacaatgaaaaca--cgatcttgttaaagtta-ttcggccaattatgcctacctctgcg 24478  T
Q  118 actatagagaagttatagttccgtttgtatta 149  Q
    ||||||||| || | ||||||||||| |||||    
T  24477 actatagagcagctgtagttccgtttctatta 24446  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 10383924 - 10384054
Alignment:
Q  19 aacaactagtaacagaagattaa-agtaaacgaaagtaaaagacaatggacacaatcgatcttttttaacgta-gttcggccagttgtgcctacctctgc 116  Q
    |||||||||||||||||||||||   ||||| |||||||||||||||| |||||   ||||||| |||||  | ||||||||| |  ||| |||||||||    
T  10383924 aacaactagtaacagaagattaattttaaacaaaagtaaaagacaatgaacaca--tgatctttgttaacacatgttcggccaatgatgcttacctctgc 10384021  T
Q  117 gactatagagaagttatagttccgtttgtatta 149  Q
    || ||||||  | |||||||| | |||||||||    
T  10384022 gattatagaacaattatagtttcatttgtatta 10384054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 134
Target Start/End: Complemental strand, 14286477 - 14286447
Alignment:
Q  104 tgcctacctctgcgactatagagaagttata 134  Q
    |||||||||||||||||||||||||||||||    
T  14286477 tgcctacctctgcgactatagagaagttata 14286447  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 16069694 - 16069763
Alignment:
Q  19 aacaactagtaacagaagattaaagtaaacgaaagtaaaagacaatggacacaatcgatcttttttaacg 88  Q
    |||||| | |||| || |||||||||||||||||||||||| ||||||| || || ||||||| ||||||    
T  16069694 aacaaccaataacggatgattaaagtaaacgaaagtaaaagtcaatggatacgattgatctttgttaacg 16069763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 31395293 - 31395330
Alignment:
Q  158 ggtttcagtgttacaagcaatatatatagcactactac 195  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  31395293 ggtttcagtgttacaagcaatatatatagtactactac 31395330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 31846406 - 31846347
Alignment:
Q  34 aagattaaagtaaacgaaagtaaaagacaatggacacaatcgatcttttttaacgtagtt 93  Q
    |||||||| |||||||||| ||||| ||||| || || |||||||||| |||||||||||    
T  31846406 aagattaatgtaaacgaaaataaaaaacaatagatacgatcgatctttgttaacgtagtt 31846347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 16563271 - 16563229
Alignment:
Q  39 taaagtaaacgaaagtaaaagacaatggacacaatcgatcttt 81  Q
    ||||||||| ||||||||||||||||||||| |||| ||||||    
T  16563271 taaagtaaaagaaagtaaaagacaatggacaaaatcaatcttt 16563229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 16069668 - 16069627
Alignment:
Q  28 taacagaagattaaagtaaacgaaagtaaaagacaatggaca 69  Q
    |||||||||||||| ||||||||||||||||  |||||||||    
T  16069668 taacagaagattaaggtaaacgaaagtaaaaagcaatggaca 16069627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 7237091 - 7237192
Alignment:
Q  46 aacgaaagtaaaagacaatggacacaatcgatcttttttaacgtagttcggccagttgtgcctacctctgcgactatagagaagttatagttccgtttgt 145  Q
    |||||||| ||||||||||| |||||  |||| ||| ||| || |||||||||| || || ||||||||||| |||||||| || |||| |||| ||| |    
T  7237091 aacgaaagaaaaagacaatgaacaca--cgatatttgttaccgcagttcggccaattttgtctacctctgcggctatagagcagctataattccattttt 7237188  T
Q  146 atta 149  Q
    ||||    
T  7237189 atta 7237192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 16630278 - 16630237
Alignment:
Q  108 tacctctgcgactatagagaagttatagttccgtttgtatta 149  Q
    ||||||||||| ||||||| |||||||||| |||||||||||    
T  16630278 tacctctgcgattatagagcagttatagtttcgtttgtatta 16630237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 36010394 - 36010319
Alignment:
Q  22 aactagtaacagaagattaaa-gtaaacgaaagtaaaagacaatggacacaatcgatcttttttaacgtagttcgg 96  Q
    ||||| ||||||||||||||| | | || ||| ||||||| ||||||||| |||||||||| |||||| |||||||    
T  36010394 aactaataacagaagattaaacgaacacaaaaataaaagataatggacacgatcgatctttgttaacgcagttcgg 36010319  T

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