View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5088_low_24 (Length: 250)
Name: NF5088_low_24
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088_low_24 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 6041420 - 6041176
Alignment:
| Q |
6 |
gagagatgaatgtgatagttccgggaccaaattgttggagtattcatttccgatatgaaaatggcaggcactacaatgggttttatttttgtcatgcaga |
105 |
Q |
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| T |
6041420 |
gagagaagaatgtgatagttccgggaccaaattgttggagtattcatttccgatatgaaaatggcaggcactacaatgggttttatttttgtcatgcaga |
6041321 |
T |
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| Q |
106 |
cgacattaaaggatcaaaatgagtcttcacacataaattaaacaattaagtgtttaaaaactgatatgttaactccttagcaattctcctattgtcacaa |
205 |
Q |
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| T |
6041320 |
caacattaaaggatcaaaatgagtcttcacacataaattaaacaattaagtgtttaaaaactgatatgttaactccttagcaattctcctattgtcacaa |
6041221 |
T |
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| Q |
206 |
tagtttcaatcaccggaagttgttcaatcaaacatagtatacctc |
250 |
Q |
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| T |
6041220 |
tagtttcaatcaccggaagttgttcaaccaaacatagtatacctc |
6041176 |
T |
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