View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5088_low_28 (Length: 235)
Name: NF5088_low_28
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088_low_28 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 34146388 - 34146622
Alignment:
| Q |
1 |
cgagtcaacaacgttcgaacaagcttcccctgccatgctttcataaactctctttgcgtcgtctacagcatcagaaacacaataaaactcagcaagtgca |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34146388 |
cgagtcagcaacgttcgaacaagcttcccctaccatgctttcataaactctctttgcgtcgtctacagcatcagaaacacaataaaactcagcaagtgca |
34146487 |
T |
|
| Q |
101 |
ctactaactgagttatcaaaatcaaaaccatccttaatgcaaagtccatgaacaaccttcccaacatacagaatcctaagtctagcacaaaccctcaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34146488 |
ctactaactgagttatcaaaatcaaaaccatccttaatgcaaagtccatgaacaaccttcccaacatacagaatcctaagtctagcacaaaccctcaaaa |
34146587 |
T |
|
| Q |
201 |
cacaatccaaagtgaactcattaggcaacacctct |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
34146588 |
cacaatccaaagtgaactcattaggcaacacctct |
34146622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 29009008 - 29008777
Alignment:
| Q |
1 |
cgagtcaacaacgttcgaacaagcttcccctgccatgctttcataaactctctttgcgtcgtctacagcatcagaaacacaataaaactcagcaagtgca |
100 |
Q |
| |
|
||||||| |||| |||||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29009008 |
cgagtcagcaacattcgaacaagcttctcctaccatgttctcataaactctctttgcgtcgtctacagcatcacaaacacaataaaactcagcaagtgca |
29008909 |
T |
|
| Q |
101 |
ctactaactgagttatcaaaatcaaaaccatccttaatgcaaagtccatgaacaaccttcccaacatacagaatcctaagtctagcacaaaccctcaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| || | || |
|
|
| T |
29008908 |
ctactaactgagttatcaaaatcaaaaccatccttaatgtaaagtccatgaacaaccttccctgcatacagaatcctaagtctagcacaaattcttataa |
29008809 |
T |
|
| Q |
201 |
cacaatccaaagtgaactcattaggcaacacc |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
29008808 |
cacaatccaaagtgaactcattaggcaacacc |
29008777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University