View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5088_low_3 (Length: 610)
Name: NF5088_low_3
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 19 - 595
Target Start/End: Complemental strand, 5176809 - 5176233
Alignment:
| Q |
19 |
ctaaccttcttagcagtaaagaagctaggagaaacnnnnnnntggatgatgtaattaacaataataaaccagcttgtacgtttgaagacattgaagaagc |
118 |
Q |
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| T |
5176809 |
ctaaccttcttagcagtaaagaagctaggagaaacaaaaaaatggatgatgtaattaacaataataaaccagcttgtgcgtttgaagacattgaagaagc |
5176710 |
T |
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| Q |
119 |
cattccaatacaaaaaagatacaaaatccaaccattctcaataagtaacatatatgatgaagaagtagaggaatcaaatagaatgcatatgtcaaatcct |
218 |
Q |
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| T |
5176709 |
cattccaatacaaaaaagatgcaaaatccaaccattctcaataagtaacatatatgatgaagaagtagaggaatcaaatagaatgcatatgtcaaatcct |
5176610 |
T |
|
| Q |
219 |
tcttcaattgtgacaagtttgagcagttcaagagaagaaagccctgaaaacatgacaagcttaccaatgctctttggaatgacttcaacaacatcaataa |
318 |
Q |
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| T |
5176609 |
tcttcaattgtgacaagtttgagcagttcaagagaagaaagccctgaaaacatgacaagcttaccaatgctctttggaatgacttcaacaacatcaataa |
5176510 |
T |
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| Q |
319 |
tgtcttcattttctttgcctcagatgccactgtctgtttttgctgcgtggaccgatgcataatcaattttgtttcatacggatttggattaggcgtagta |
418 |
Q |
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| T |
5176509 |
tgtcttcattttctttgcctcagatgccactgtctgtttttgctgcgtggaccgatgcataatcagttttgtttcgtacggatttggattaggcgtagta |
5176410 |
T |
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| Q |
419 |
acttcatcacgcagtttttcctgatatagacttaacgaacgagacagttttaaactgattttgttatagtgtaatatgaaccgtctgatctccttatttt |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5176409 |
acttcatcacgcagtttttcctgatatagacttaacgaacgagacagttttaaactgattttgttatagtgtaatatgaaccgtctgatctccttatttt |
5176310 |
T |
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| Q |
519 |
gcatgcatttttaggaagacagaattttaatttagtcctattaatccttttaattatatagtgttacagttaagcat |
595 |
Q |
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| T |
5176309 |
gcatgcatttttaggaagacagaattttaatttaatcctattaatccttttaattatatagtgttacaattaagcat |
5176233 |
T |
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