View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5088_low_30 (Length: 228)
Name: NF5088_low_30
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088_low_30 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 3401477 - 3401257
Alignment:
| Q |
11 |
aaacacaattttaaacatatatcataaaattaatgcaaaccatttgattaactaaccaaatgttttagtttattgaatgaattaaatagatcaggttcac |
110 |
Q |
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| T |
3401477 |
aaacacaattttaaacatatatcataaaattaatgcagaccatttgattaactaaccaaatgttttagtttattgaatgaattaaatagatcaggttcac |
3401378 |
T |
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| Q |
111 |
atatagcaactaactatatat---aacagcaaaaataggggaggggtccttccaaaagtgttgttaacactttatgttgcaactctatcaactgaaatat |
207 |
Q |
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| T |
3401377 |
atatggtaactaactatatataaaaacagcaaaaataggggaggggtccttccaaaagtgttgttaacactttatgttgcaactctatcaactgaaatat |
3401278 |
T |
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| Q |
208 |
cattaaactcaataagagtaa |
228 |
Q |
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|||||||| |||||||||||| |
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| T |
3401277 |
cattaaacccaataagagtaa |
3401257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 20864798 - 20864574
Alignment:
| Q |
11 |
aaacacaattttaaacatatatcataaaattaatgcaaaccatttgattaactaaccaaatgttttagtttattgaatgaattaaatagatcaggttcac |
110 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20864798 |
aaacacaattttaaacatatatcataaaattaatgcataccatttgattaactaaccaaatgttttagtttattgaatgaattaaatagatcaggttcac |
20864699 |
T |
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| Q |
111 |
atatagcaactaactatatat---aacagcaaaaataggggaggggtccttccaaaagtgttgttaacactttatgttgcaac----tctatcaactgaa |
203 |
Q |
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| T |
20864698 |
atatagtaactaactatatatagaaacagcaaaaataggggaagggtccttccaaaagtgttgttaacattttatgttgcaactctatctatcaactgaa |
20864599 |
T |
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| Q |
204 |
atatcattaaactcaataagagtaa |
228 |
Q |
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|||||||||||| |||||||||||| |
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| T |
20864598 |
atatcattaaacccaataagagtaa |
20864574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 7131136 - 7131351
Alignment:
| Q |
12 |
aacacaattttaaacatatatcataaaattaatgcaaaccat-ttgattaactaaccaaatgttttagtttattgaatgaattaaatagatcaggttcac |
110 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||| |
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| T |
7131136 |
aacacaattttaaacataaatcataaaattaatgctcaccatgttgattaactaaccaaatgttttagtttattgaataaattaaacagatcagattcac |
7131235 |
T |
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| Q |
111 |
atatagcaactaactatatat-------aacagcaaaaataggggaggggtccttccaaaagtgttgttaacacttta-tgttgcaactctatcaactga |
202 |
Q |
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| T |
7131236 |
atatag-tagtaactatatatagttagaaacagcaaaaa-----gaggggtacttccaaaagtgttgtttacactttattgttgcaactctatcaactga |
7131329 |
T |
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| Q |
203 |
aatatcattaaactcaataaga |
224 |
Q |
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| T |
7131330 |
aagatcattaaacccaataaga |
7131351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 7131570 - 7131647
Alignment:
| Q |
148 |
gaggggtccttccaaaagtgttgttaacactttat-gttgcaactctatcaactgaaatatcattaaactcaataaga |
224 |
Q |
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||||||| |||||||||||| |||| ||||||||| |||||||||||||||||||||| |||||||||| |||||||| |
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| T |
7131570 |
gaggggtacttccaaaagtgctgtttacactttattgttgcaactctatcaactgaaagatcattaaacccaataaga |
7131647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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