View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5088_low_5 (Length: 582)
Name: NF5088_low_5
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088_low_5 |
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| [»] scaffold0009 (2 HSPs) |
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| [»] scaffold0328 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 394
Target Start/End: Original strand, 22929424 - 22929806
Alignment:
| Q |
11 |
cacagacctcaaataagcaaagttataggtccaacaccaacacttgttactcctgaaaggcctgcattgttcaaaaaacttactgtggaagattactaca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22929424 |
cacagacctcaaataagcaaagttataggtccaacaccaacacttgttactcctgaaaggcctgcattattcaaaaaacttactgtggaagattactaca |
22929523 |
T |
|
| Q |
111 |
aagcattcttttcacgtaagctacaaggaaaatcatgccttgatattatgagaatccaaaatgagaatgatatgtgatgaaagtaccataggactataat |
210 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22929524 |
aagcattcttttcacgtaagctacaaggaaagtcatgccttgatattatgagaatccaaaatgagaatgatatgtgatgaaagtaccataggaatataat |
22929623 |
T |
|
| Q |
211 |
tcaataatgtggtagcaaaggtatagtaattcaataaatatgatagaaattgaaatttgtattcagaaacaatatagataagaaatatttatgtgtgatg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22929624 |
tcaataatgtggtagcaaaggtatagtaattcaataaatatgatagaaattgaaatttgtattcagaaacaatatagataagaaatatttatgtgtgatg |
22929723 |
T |
|
| Q |
311 |
ttatataaatatttgtttataaatagtttgtaannnnnnnnnngcttatatatgttccatatgtcatatttatactaataaatg |
394 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22929724 |
ttatataaatatttgtttataaatagtttgtaa-tttttttttgcttatatatgttccatatgtcatatttatactaataaatg |
22929806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 398 - 563
Target Start/End: Original strand, 22929843 - 22930008
Alignment:
| Q |
398 |
aagttaagaattatataaaaaataggatatgagaaagaacaagaatagagatactcttatgtgtaattttcacacgataagataaaaccagacataaaca |
497 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22929843 |
aagttaagaattatatcaaaaataggatatgataaagaacaagaatagagatactcttatgtgtaattttcacacgataagataaaaccagacataaaca |
22929942 |
T |
|
| Q |
498 |
tatgaaaactatagaagaagatatatagttcgataatgagagatcataccaatttatatctcatgt |
563 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22929943 |
tatgaaaactatagaagaatatatatagttcgataatgagagatcataccaatttatatctcatgt |
22930008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 11 - 178
Target Start/End: Original strand, 21264823 - 21264990
Alignment:
| Q |
11 |
cacagacctcaaataagcaaagttataggtccaacaccaacacttgttactcctgaaaggcctgcattgttcaaaaaacttactgtggaagattactaca |
110 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
21264823 |
cacagacctcaaatgagcaaagttataggtccaacacaaagtcttgttactcttgaaaggcctgcattgttcaaaacacttacagtggaagattactaca |
21264922 |
T |
|
| Q |
111 |
aagcattcttttcacgtaagctacaaggaaaatcatgccttgatattatgagaatccaaaatgagaat |
178 |
Q |
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|
|||||||||||||||| ||||||||||| ||||||||||||||| |||||||| |||||||||||||| |
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| T |
21264923 |
aagcattcttttcacgcaagctacaagggaaatcatgccttgatcttatgagagtccaaaatgagaat |
21264990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 23021620 - 23021424
Alignment:
| Q |
11 |
cacagacctcaaataagcaaagttataggtccaacaccaacacttgttactcctgaaaggcctgcattgttcaaaaaacttactgtggaagattactaca |
110 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||| ||||||||| |||||||| |||||||||||||||| |||||| || ||||||||||||| |
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| T |
23021620 |
cacagacctcaaatgagcaccgttataggtccaacaccaagacttgttacccctgaaagacctgcattgttcaaaacacttaccgttgaagattactaca |
23021521 |
T |
|
| Q |
111 |
aagcattcttttcacgtaagctacaaggaaaatcatgccttgatattatgagaatccaaaatgagaatgatatgtgatgaaagtaccataggactat |
207 |
Q |
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||| | | |||||||| ||||||| || |||||||| |||||| |||||||||| ||||| || ||| | ||||| |||||| ||||||||||| |
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| T |
23021520 |
aagtaatattttcacgccagctacaggggaaatcatgtcttgatcttatgagaattcaaaaagataataggaagtgataaaagtatcataggactat |
23021424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 22981492 - 22981425
Alignment:
| Q |
19 |
tcaaataagcaaagttataggtccaacaccaacacttgttactcctgaaaggcctgcattgttcaaaa |
86 |
Q |
| |
|
|||||| |||| ||||||||||||||||||| ||| |||| ||||||| |||||||||||||||| |
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| T |
22981492 |
tcaaatgagcagtgttataggtccaacaccaagccttattacagctgaaagacctgcattgttcaaaa |
22981425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 21351436 - 21351504
Alignment:
| Q |
18 |
ctcaaataagcaaagttataggtccaacaccaacacttgttactcctgaaaggcctgcattgttcaaaa |
86 |
Q |
| |
|
||||||| |||||| || |||||||||||||| ||| ||||| ||||||| ||||| |||||||||| |
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| T |
21351436 |
ctcaaatgagcaaaattctaggtccaacaccagaccttattactgctgaaagacctgctttgttcaaaa |
21351504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 120; Significance: 4e-61; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 11 - 178
Target Start/End: Complemental strand, 22521 - 22354
Alignment:
| Q |
11 |
cacagacctcaaataagcaaagttataggtccaacaccaacacttgttactcctgaaaggcctgcattgttcaaaaaacttactgtggaagattactaca |
110 |
Q |
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|
||||||||||| || |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||| |
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| T |
22521 |
cacagacctcagatgagcaaagttataggtccaacacaaaaacttgttactcctgaaaggcctgcattgttcaaaacaattactgtagaagattactaca |
22422 |
T |
|
| Q |
111 |
aagcattcttttcacgtaagctacaaggaaaatcatgccttgatattatgagaatccaaaatgagaat |
178 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||| ||||| |||||||||||||||| |||||| |
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|
| T |
22421 |
aagcattcttttcacgcaagctacaagggaaatcatgcattgatcttatgagaatccaaaacgagaat |
22354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 257339 - 257287
Alignment:
| Q |
34 |
tataggtccaacaccaacacttgttactcctgaaaggcctgcattgttcaaaa |
86 |
Q |
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||||||||||||||| | |||||||||||| |||| |||||||| ||||||| |
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|
| T |
257339 |
tataggtccaacacccagccttgttactcctcaaagtcctgcattattcaaaa |
257287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0328 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 9891 - 9943
Alignment:
| Q |
34 |
tataggtccaacaccaacacttgttactcctgaaaggcctgcattgttcaaaa |
86 |
Q |
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|||||| |||||||| | ||||| ||||||||||| |||||||||||||||| |
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| T |
9891 |
tataggcccaacacccagccttgtgactcctgaaagtcctgcattgttcaaaa |
9943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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