View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5088_low_7 (Length: 555)
Name: NF5088_low_7
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 154 - 536
Target Start/End: Complemental strand, 38874108 - 38873728
Alignment:
| Q |
154 |
caattatgcttcatattatactattacttaaaataaaataaatccaatcttatacnnnnnnngggattttcttttaccacccttcctcgaattttctttg |
253 |
Q |
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| T |
38874108 |
caattatgcttcacattata---ttagttaaaataaaataaatccaatcttatactttttttgggattttcttttaccacccttcctcgaattttctttg |
38874012 |
T |
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| Q |
254 |
agagagaggtccagaaggcccaaaactaaacaaggatcctatttttcttagaaattgctatatggaccgtttgcttgctcaaatacctcttgaaattcta |
353 |
Q |
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| T |
38874011 |
agagagaggtctagaaggcccaaaactaaacaaggatcctatttttcttagaaattgctatatggaccgtctgcttgctcaaatacctcttgaaattcta |
38873912 |
T |
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| Q |
354 |
aaagcgtcctttatacaacagtcaagatttttgattttatgagatcgaaagatgtctattgagcattatgtattagaatatatg-tttgatctgtttcaa |
452 |
Q |
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| T |
38873911 |
aaagcgtcctttatacaacagtcaagatttttgattttatgagatcgaaagatgtctattgagcattatgtattagaatatatgttttgatctgtttcaa |
38873812 |
T |
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| Q |
453 |
aataataccataacataaactttgttctcatgtgcacgacaattgattcaaaacataaaaaacttgagttcttgacattcaaac |
536 |
Q |
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| T |
38873811 |
aataataccataacataaactttgttctcatgtgcgcgacaattgattcaaaacataaaaaacttgagttcttgacattcaaac |
38873728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 38874263 - 38874178
Alignment:
| Q |
1 |
ggcatagcgaatggtagatgttgttggaatggagattcgaacgggatgcgtaggataagcagagaaggcgcacgttatgctcaaca |
86 |
Q |
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| T |
38874263 |
ggcatagcgaatggtagatgttgttggaatggagattcgaacgggatgcgtaggataagcagagaaggcgcacgttatgctcaaca |
38874178 |
T |
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