View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5088_low_9 (Length: 493)
Name: NF5088_low_9
Description: NF5088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5088_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 464
Target Start/End: Original strand, 32054380 - 32054817
Alignment:
| Q |
13 |
aatattacaagagtgcatcaccttcttcccaacattctttttataatcggttaaaattcacatagatttcatcaatttaagaacaagtcgcatgacatgg |
112 |
Q |
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| T |
32054380 |
aatattacaagagtgcgtcaccttcttcccaacattctttttataatcggttaaaattcacatagatttcgtcaatttgagaacgagtcgcatgacatgg |
32054479 |
T |
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| Q |
113 |
aagatgatcatataaattagagaaactcatatataatatttatgtgttgtgggttaaaataaaagctacaatttatagtttctattaaatcacggtccat |
212 |
Q |
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| T |
32054480 |
aagatgatcgtataaattagagaaactcatatatataatatat--------------aataaaagctacaatttatagcttctattaaatcacggtccat |
32054565 |
T |
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| Q |
213 |
caacgtatgaaagggaaaccaaacatatagataattgtttcaaccaatttaacaaaaagagaattggaaagagagcatgagataggttgttgacgtacca |
312 |
Q |
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| T |
32054566 |
caaagtatgaaagggaaaccaaacatatagataattatttcaaccaatttaacaaaaagagaattggaaagagagcatgagataggttgttgacgtacca |
32054665 |
T |
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| Q |
313 |
aacatctagtgcggaagatataaacataggtactacaaatggtacaaatcttagagtgaggaatcccaggtctccgtcttnnnnnnnnnnnnnnnnnnnn |
412 |
Q |
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| T |
32054666 |
aacatctagtgcggaagatataaacataggtactacaaatggtacaaatcttagagtgaggaatcccaggtctccgtcgtccaccactaccaccaccacc |
32054765 |
T |
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| Q |
413 |
nnntcttccagatgccgtactcacatcatcatagctcaaactatacgctgaa |
464 |
Q |
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| T |
32054766 |
acctcttccagatgccgtactcacatcatcatagctcaaactatacgctgaa |
32054817 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 376
Target Start/End: Original strand, 27680359 - 27680427
Alignment:
| Q |
308 |
taccaaacatctagtgcggaagatataaacataggtactacaaatggtacaaatcttagagtgaggaat |
376 |
Q |
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| T |
27680359 |
taccaagcatctagtcctgaaaaaataaacatagtcattgcaaatggtgcaaatcttagagtgaggaat |
27680427 |
T |
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