View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5089_high_4 (Length: 242)
Name: NF5089_high_4
Description: NF5089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5089_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 7773651 - 7773874
Alignment:
| Q |
1 |
cacttgaagaggtttaagacagatggggtttttgttgaaaagattgacaagcatatcgatttccagttgcaattggacatgcagccttacaccattttga |
100 |
Q |
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| T |
7773651 |
cacttgaagaggtttaagacagatggggtttttgttgaaaagattgacaagcatatcgatttccagttgcaattggacatgcagccttacaccatttcga |
7773750 |
T |
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| Q |
101 |
atgatgcatcgtctaaatactatctatatgcagttgttgtccatactggaatttcatctacttcagggcattatttctgcttcgttcgcactgctccgga |
200 |
Q |
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| T |
7773751 |
atgatgcatcgtctaaatactatctatatgcagttgttgtccatactggaatttcatctacttcagggcattatttctgcttcgttcgcactgctccgga |
7773850 |
T |
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| Q |
201 |
tacttggcataaattggatgactc |
224 |
Q |
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||| |||||||||||||||||||| |
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| T |
7773851 |
tacgtggcataaattggatgactc |
7773874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 7767516 - 7767739
Alignment:
| Q |
1 |
cacttgaagaggtttaagacagatggggtttttgttgaaaagattgacaagcatatcgatttccagttgcaattggacatgcagccttacaccattttga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7767516 |
cacttgaagaggtttaagacagatggggtttttgttgaaaagattgacaagcatatcgatttccagttgcaattggacatgcagccttacaccatttcga |
7767615 |
T |
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| Q |
101 |
atgatgcatcgtctaaatactatctatatgcagttgttgtccatactggaatttcatctacttcagggcattatttctgcttcgttcgcactgctccgga |
200 |
Q |
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| T |
7767616 |
atgatgcatcgtctaaatactatctatatgcagttgttgtccatactggaatttcatctacttcagggcattatttctgcttcgttcgcactgctccggg |
7767715 |
T |
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| Q |
201 |
tacttggcataaattggatgactc |
224 |
Q |
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||| |||||||||||||||||||| |
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| T |
7767716 |
tacgtggcataaattggatgactc |
7767739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 7778492 - 7778706
Alignment:
| Q |
7 |
aagaggtttaagacagatggggtttttgttgaaaagattgacaagcatatcgatttccagttgcaattggacatgcagccttacaccattttgaatgatg |
106 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| |||| | ||||||||||||||||||||||| | |||||||| |
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| T |
7778492 |
aagaggtttaagacatatgggatttttgttgaaaagattgacaagcatatcaatttcccgttggagttggacatgcagccttacaccatatcgaatgatg |
7778591 |
T |
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| Q |
107 |
catcgtctaaatactatctatatgcagttgttgtccatactggaatttcatctacttcagggcattatttctgcttcgttcgcactgctccggatacttg |
206 |
Q |
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| T |
7778592 |
catcgtccaaatatgatctgtatgcagtagttgtgcatactggattttcatctacttcagggcattattttagcttcgttcgcactgctccggatacatg |
7778691 |
T |
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| Q |
207 |
gcataaattggatga |
221 |
Q |
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|||||| || ||||| |
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| T |
7778692 |
gcataagttagatga |
7778706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 12753438 - 12753339
Alignment:
| Q |
122 |
atctatatgcagttgttgtccatactggaatttcatctacttcagggcattatttctgcttcgttcgcactgctccggatacttggcataaattggatga |
221 |
Q |
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||||||||||||||||||| |||| ||||| ||||||| || ||||||||||||||||| |||||||||||||| || || |||||||| |||||||| |
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| T |
12753438 |
atctatatgcagttgttgtgcataatggaacttcatctgactctgggcattatttctgctttgttcgcactgctccagacacatggcataagttggatga |
12753339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 12816398 - 12816299
Alignment:
| Q |
122 |
atctatatgcagttgttgtccatactggaatttcatctacttcagggcattatttctgcttcgttcgcactgctccggatacttggcataaattggatga |
221 |
Q |
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||||||||||||||||||| |||| ||||| ||||||| || ||||||||||||||||| |||||||||||||| || || |||||||| |||||||| |
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| T |
12816398 |
atctatatgcagttgttgtgcataatggaacttcatctgactctgggcattatttctgctttgttcgcactgctccagacacatggcataagttggatga |
12816299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 12753610 - 12753540
Alignment:
| Q |
34 |
gttgaaaagattgacaagcatatcgatttccagttgcaattggacatgcagccttacaccattttgaatga |
104 |
Q |
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| T |
12753610 |
gttgaaaagattgacaagcatatcaattttccattggagttggatttgcaaccttacaccattttgaatga |
12753540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 12816570 - 12816500
Alignment:
| Q |
34 |
gttgaaaagattgacaagcatatcgatttccagttgcaattggacatgcagccttacaccattttgaatga |
104 |
Q |
| |
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|||||||||||||||||||||||| |||| | ||| | ||||| |||| |||||||||||||||||||| |
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| T |
12816570 |
gttgaaaagattgacaagcatatcaattttccattggagttggatttgcaaccttacaccattttgaatga |
12816500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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