View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5089_low_1 (Length: 579)
Name: NF5089_low_1
Description: NF5089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5089_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 133 - 568
Target Start/End: Complemental strand, 43000788 - 43000348
Alignment:
| Q |
133 |
atgctcgtatgttttgtttagttgtttatctattccattttcatcgaattattatatctttcgggatttta-----atcactagtttttatctagttctg |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
43000788 |
atgctcgtatgttttgtttagttgtttatctattccattttcatcgaattattatatctttcgggatttcatttcaatcactagtttttatctagttctg |
43000689 |
T |
|
| Q |
228 |
ttttttgctcttgcttccattgtcttctcattttcattttgatgccatagttgaaaaatttgttcagatagattgaatcattcagatattaatttaggca |
327 |
Q |
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|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43000688 |
ttttttgctcttccttccattgtcttctcatttgcattttgatgccatagttgaaaattttgttcagatagattgaatcattcagatattaatttaggca |
43000589 |
T |
|
| Q |
328 |
caaagctatggctgaggaacccagacaaactcttggggattactggaagcctcgcagaatacaaagctgcattgtcctccctcctgttgatgcggatgtt |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43000588 |
caaagctatggctgaggaacccagacaaactcttggggattactggaagcctcgcagaatacaaagctgcattgtcctccctcctgttgatgcggatgtt |
43000489 |
T |
|
| Q |
428 |
agttacgacctctcatctttgattcgttctatccgggcattcaatcagtttggcgggttaccctctgaagatcccaaaatgcatctaaacgaatttgtag |
527 |
Q |
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| T |
43000488 |
agttacgacctctcatctttgattcgttctatccgggcattcaatcagtttggcgggttaccctctgaagatcccaaaatgcatctaaacgaatttgtag |
43000389 |
T |
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| Q |
528 |
aaacttgtagcaccttgaaatgtgatgcattatgtgatgat |
568 |
Q |
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| T |
43000388 |
aaacttgtagcaccttgaaatgtgatgcactatgtgatgat |
43000348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 43001024 - 43000907
Alignment:
| Q |
17 |
cataattagctatggagaatttcgggtaacaacttaattccatacaagtgagggataggttcttggtttaccataattaagtgaatttcttatttgcttt |
116 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43001024 |
cataattagctatggagaatttcggttaacaacttaattccatacaagtgagggataggttcttggtttaccataattaagtgaatttcttatttgcttt |
43000925 |
T |
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| Q |
117 |
gtggattctttgtcctat |
134 |
Q |
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||||||||||| |||||| |
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| T |
43000924 |
gtggattctttatcctat |
43000907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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