View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5089_low_6 (Length: 237)
Name: NF5089_low_6
Description: NF5089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5089_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 2850615 - 2850755
Alignment:
| Q |
1 |
cttttcttgtctttgtaatctataagggcgaatgttttgagctgtgaagaaaggcactgtggaacaattggtggattcttccaatctttggcaacctcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2850615 |
cttttcttgtctttgtaatctataaggacgaatgttttgagctgtgaagaaagacactgtggaacaattggtggattcttccaatctttggcaacctcct |
2850714 |
T |
|
| Q |
101 |
cattatcatatcgatctagacagtcctgcaagcaattcaca |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2850715 |
cattatcatatcgatctagacagtcctgcaagcaattcaca |
2850755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University