View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5090-Insertion-2 (Length: 1140)

Name: NF5090-Insertion-2
Description: NF5090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5090-Insertion-2
NF5090-Insertion-2
[»] chr6 (5 HSPs)
chr6 (691-887)||(31379946-31380140)
chr6 (503-553)||(31405898-31405948)
chr6 (172-228)||(31406649-31406705)
chr6 (781-838)||(31395720-31395777)
chr6 (789-893)||(30607530-30607636)
[»] chr1 (6 HSPs)
chr1 (588-660)||(30368240-30368308)
chr1 (588-660)||(13007192-13007260)
chr1 (588-660)||(13100992-13101060)
chr1 (588-660)||(13204451-13204519)
chr1 (588-660)||(13070308-13070376)
chr1 (589-660)||(13094392-13094459)
[»] chr2 (1 HSPs)
chr2 (787-878)||(37484451-37484544)


Alignment Details
Target: chr6 (Bit Score: 73; Significance: 9e-33; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 691 - 887
Target Start/End: Complemental strand, 31380140 - 31379946
Alignment:
Q  691 acttaattgacttgctttctatttaggtgtatgccatttaggtgggtggttcaaaccgagtcatctgatttaatacaacaaatacagttgttttagagag 790  Q
    ||||||||||||||||||||  | ||||| |||| ||||| |||||||||| ||||| || |||| ||||||||||||   ||||| || ||||  ||||    
T  31380140 acttaattgacttgctttctcctaaggtgcatgcgatttaagtgggtggttgaaaccaagccatccgatttaatacaa---atacattttttttt-agag 31380045  T
Q  791 accgagtcatatgacaaagtcatccggttt-atctaattcaatcattcggttcgacc-atgatttaatgattcgatcaataaaccaatgattcaataac 887  Q
    | || || |||||||||||||||||| ||| ||| |||||||||||||||||||||| ||||||||||| || |||||||||||||||| || ||||||    
T  31380044 atcgggtgatatgacaaagtcatccgattttatcaaattcaatcattcggttcgaccaatgatttaatggttagatcaataaaccaatggtttaataac 31379946  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 503 - 553
Target Start/End: Complemental strand, 31405948 - 31405898
Alignment:
Q  503 ttgttcatccaaaattcacttattagtagggttagagtgcacaccattgtt 553  Q
    |||||| |||||||| |||||||||||||||||||||||||||||| ||||    
T  31405948 ttgttcttccaaaatgcacttattagtagggttagagtgcacaccaatgtt 31405898  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 31406705 - 31406649
Alignment:
Q  172 tgtttgtttagtagaaatatcaaaatgcatattattccttgtgacttgtatcacccc 228  Q
    ||||| |||||||||||||  |||||||||||||||| || ||||||||||||||||    
T  31406705 tgtttctttagtagaaataagaaaatgcatattattcattttgacttgtatcacccc 31406649  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 781 - 838
Target Start/End: Complemental strand, 31395777 - 31395720
Alignment:
Q  781 ttttagagagaccgagtcatatgacaaagtcatccggtttatctaattcaatcattcg 838  Q
    |||||||||||| ||||||||||| ||||| ||||| ||||| | |||||||||||||    
T  31395777 ttttagagagactgagtcatatgaaaaagttatccgctttatgtgattcaatcattcg 31395720  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 789 - 893
Target Start/End: Complemental strand, 30607636 - 30607530
Alignment:
Q  789 agaccgagtcatatgacaaagtcatccggttt-atctaattcaatcattcggttcgacca-tgatttaatgattcgatcaataaaccaatgattcaataa 886  Q
    ||||||||||||| ||  |||||||||||||| |||  |||||||||| | |||| | || | |||| |||  ||||||| |||||||||||||||||||    
T  30607636 agaccgagtcatacgattaagtcatccggttttatccgattcaatcatacagttccatcaataattttatggctcgatcagtaaaccaatgattcaataa 30607537  T
Q  887 cattatc 893  Q
    | |||||    
T  30607536 ctttatc 30607530  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 588 - 660
Target Start/End: Complemental strand, 30368308 - 30368240
Alignment:
Q  588 attgaaagctatgaccttgtaagatggtacatgcatgtataatatttcctctctctaatacccatctctcagg 660  Q
    |||||||||||||| ||||||||||||||    |||||||||| | |||||||||| ||||||||||||||||    
T  30368308 attgaaagctatgaacttgtaagatggta----catgtataatgtgtcctctctctgatacccatctctcagg 30368240  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 588 - 660
Target Start/End: Original strand, 13007192 - 13007260
Alignment:
Q  588 attgaaagctatgaccttgtaagatggtacatgcatgtataatatttcctctctctaatacccatctctcagg 660  Q
    |||||||||||||| ||||||||||||||    |||||||||| | |||||||||| | ||||||||||||||    
T  13007192 attgaaagctatgaacttgtaagatggta----catgtataatgtgtcctctctctgacacccatctctcagg 13007260  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 588 - 660
Target Start/End: Original strand, 13100992 - 13101060
Alignment:
Q  588 attgaaagctatgaccttgtaagatggtacatgcatgtataatatttcctctctctaatacccatctctcagg 660  Q
    |||||||||||||| ||||||||||||||    |||||||||| | |||||||||| | ||||||||||||||    
T  13100992 attgaaagctatgaacttgtaagatggta----catgtataatgtgtcctctctctgacacccatctctcagg 13101060  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 588 - 660
Target Start/End: Original strand, 13204451 - 13204519
Alignment:
Q  588 attgaaagctatgaccttgtaagatggtacatgcatgtataatatttcctctctctaatacccatctctcagg 660  Q
    |||||||||||||| ||||||||||||||    |||||||||| | |||| ||||| ||||||||||||||||    
T  13204451 attgaaagctatgaacttgtaagatggta----catgtataatgtgtcctgtctctgatacccatctctcagg 13204519  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 588 - 660
Target Start/End: Complemental strand, 13070376 - 13070308
Alignment:
Q  588 attgaaagctatgaccttgtaagatggtacatgcatgtataatatttcctctctctaatacccatctctcagg 660  Q
    |||||||||||||| |||||||||||| |    |||||||||| | |||| ||||| ||||||||||||||||    
T  13070376 attgaaagctatgaacttgtaagatggaa----catgtataatgtgtcctgtctctgatacccatctctcagg 13070308  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 589 - 660
Target Start/End: Original strand, 13094392 - 13094459
Alignment:
Q  589 ttgaaagctatgaccttgtaagatggtacatgcatgtataatatttcctctctctaatacccatctctcagg 660  Q
    ||||||||||||| ||||||||||||||    |||||||||||| ||| |||||  ||| ||||||||||||    
T  13094392 ttgaaagctatgaacttgtaagatggta----catgtataatatctcccctctcagatatccatctctcagg 13094459  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 787 - 878
Target Start/End: Complemental strand, 37484544 - 37484451
Alignment:
Q  787 agagaccgagtcatatgacaaagtcatccggttt-atctaattcaatcattcggttcgacca-tgatttaatgattcgatcaataaaccaatga 878  Q
    |||||||||||||| | ||  ||||||||||||| ||| | ||| ||||| ||||||||||| ||| | |||| |||||||||||| |||||||    
T  37484544 agagaccgagtcatctaaccgagtcatccggtttaatccagttccatcatgcggttcgaccagtgactcaatggttcgatcaataacccaatga 37484451  T

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