View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5090-Insertion-3 (Length: 1113)
Name: NF5090-Insertion-3
Description: NF5090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5090-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 623; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 8 - 902
Target Start/End: Original strand, 37939505 - 37940399
Alignment:
| Q |
8 |
ctttctgattttcctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgt |
107 |
Q |
| |
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| T |
37939505 |
ctttctgattttcctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacaggttcttcttttaccgtttctgt |
37939604 |
T |
|
| Q |
108 |
agcttgaacttcagtagccacaggttcttcttttgccgtttctgtaggatcaacttcagtaaccacaggtttgacttttactgattctgtcagatcaact |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37939605 |
agcttgaacttcagtagccacaggttcttcttttaccatttctctaggatcaacttcagtaaccacaggtttgacttttactgattctgtcagatcaact |
37939704 |
T |
|
| Q |
208 |
tcagtaaccacgggttcttttactgtttctgtagcttcaacttctgtagccacagcttcttcttttactgtctctgtaggatcaacttcagtaactatag |
307 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37939705 |
tcagtaaccaggggttcttttactgtttttgtaatttcaacttctgtagccacagcttcttcttttactgtctctgtaggatcaacttcagtaactatag |
37939804 |
T |
|
| Q |
308 |
gttcgtcttttaccgtttctgttgcctcgaattcagtagctgcaggttcatcttttaccgtttctgtaggctcaactacagttgtcacaggttcttcttt |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37939805 |
gttcgtcttttaccgtttctgttgcctcgaattcagtagctgcaggttcatcttttaccatttctgtaggctcaactacagttgtcacaggttcttcttt |
37939904 |
T |
|
| Q |
408 |
tacggtttctgtagcttcaacttcggtagccacaaattcttcttttactgtttctgtagcttcaacttcagtagccactggttcttcttttactgtttct |
507 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37939905 |
tacggtttctgtagcttcaacttcagtagccacagattcttcttttactgtttctgtagcttcaacttcagtagccactggttcttcttttactgtttct |
37940004 |
T |
|
| Q |
508 |
gtagcctcaacttcagtagctgcaggttcgtcttttaccgtttctgtagcctcaacttcagttgccacaggttcttcttttaccgtttctgtaggctcaa |
607 |
Q |
| |
|
||||| |||||||||||||| | ||||| |||||||| ||||||||||| ||||||||||| || ||||||| ||||||||||||||||||| ||||| |
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|
| T |
37940005 |
gtagcttcaacttcagtagccactggttcttcttttactgtttctgtagcttcaacttcagtagctgcaggttcgtcttttaccgtttctgtagcctcaa |
37940104 |
T |
|
| Q |
608 |
cttcggtagccacaggttcttcttttactgtttctgtagcttcagcttcagtatctagaggttcttcttttaccgtttctgtaggatcaacttcagtaac |
707 |
Q |
| |
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|||| || |||||||||||||||||||| |||||||||| ||| |||||||| | | |||||||||||||| |||||||||| ||| |||||||| | |
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| T |
37940105 |
cttcagttgccacaggttcttcttttaccgtttctgtaggctcaacttcagtagccacgggttcttcttttactgtttctgtagcttcagcttcagtagc |
37940204 |
T |
|
| Q |
708 |
cacaggttcgtcttttacggtttctgtaaccttaacttcagtagctgcaggttcttcttttactgtttccgtagcctcaacttcagaagccacaagttct |
807 |
Q |
| |
|
| |||||| |||||||| ||||||||| | |||||||||| | ||||||| |||||||| ||||| ||| ||| |||||||| ||| || ||||| |
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|
| T |
37940205 |
tagaggttcttcttttaccgtttctgtaggatcaacttcagtaaccacaggttcgtcttttacggtttctgtaaccttaacttcagtagctgcaggttct |
37940304 |
T |
|
| Q |
808 |
tcttttagtgtttctgtagcctcaacttcagtaaccacgggttcttcttttactatctctgcagtctcaacttcagtaaccacgggttcttcttt |
902 |
Q |
| |
|
||||||| |||||| |||||||||||||||||| |||| |||||||||||| | | |||| || |||||||||||||||||||||||||||||| |
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|
| T |
37940305 |
tcttttactgtttccgtagcctcaacttcagtagccacaagttcttcttttagtgtttctgtagcctcaacttcagtaaccacgggttcttcttt |
37940399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 21 - 1098
Target Start/End: Original strand, 37939563 - 37940644
Alignment:
| Q |
21 |
ctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttca |
120 |
Q |
| |
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||||||||||||| |||||||||| ||||||| |||||||||| | ||||||||||||||| ||||||||||||||| ||||| ||| | ||||||| |
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|
| T |
37939563 |
ctcaacttcagtagccacaggttcttcttttaccgtttctgtagcttgaacttcagtagccacaggttcttcttttaccatttctctaggatcaacttca |
37939662 |
T |
|
| Q |
121 |
gtagccacaggttcttcttttgccgtttctgtaggatcaacttcagtaaccacaggtttgacttttactgattctgtcagatcaacttcagtaaccacgg |
220 |
Q |
| |
|
||| ||||||||| ||||| | | |||||| |||||||||||||||||| |||| ||||||||| || ||| | |||||||| ||| |||| | |
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|
| T |
37939663 |
gtaaccacaggtttgacttttactgattctgtcagatcaacttcagtaaccaggggtt---cttttactgtttttgtaatttcaacttctgtagccacag |
37939759 |
T |
|
| Q |
221 |
gttctt---ttactgtttctgtagcttcaacttctgtagccacagcttcttcttttactgtctctgtaggatcaacttcagtaactataggttcgtcttt |
317 |
Q |
| |
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||||| ||||||| ||||||| |||||||| ||| | | || ||| |||||||| || ||||| | || | ||||||| || |||||| ||||| |
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|
| T |
37939760 |
cttcttcttttactgtctctgtaggatcaacttcagtaactataggttcgtcttttaccgtttctgttgcctcgaattcagtagctgcaggttcatcttt |
37939859 |
T |
|
| Q |
318 |
taccgtttctgttgcctcgaattcagtagctgcaggttcatcttttaccgtttctgtaggctcaactacagttgtcacaggttcttcttttacggtttct |
417 |
Q |
| |
|
|||| ||||||| | ||| | | |||| | ||||||| |||||||| |||||||||| |||||| |||| | ||||| |||||||||||| |||||| |
|
|
| T |
37939860 |
taccatttctgtaggctcaactacagttgtcacaggttcttcttttacggtttctgtagcttcaacttcagtagccacagattcttcttttactgtttct |
37939959 |
T |
|
| Q |
418 |
gtagcttcaacttcggtagccacaaattcttcttttactgtttctgtagcttcaacttcagtagccactggttcttcttttactgtttctgtagcctcaa |
517 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
37939960 |
gtagcttcaacttcagtagccactggttcttcttttactgtttctgtagcttcaacttcagtagccactggttcttcttttactgtttctgtagcttcaa |
37940059 |
T |
|
| Q |
518 |
cttcagtagctgcaggttcgtcttttaccgtttctgtagcctcaacttcagttgccacaggttcttcttttaccgtttctgtaggctcaacttcggtagc |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37940060 |
cttcagtagctgcaggttcgtcttttaccgtttctgtagcctcaacttcagttgccacaggttcttcttttaccgtttctgtaggctcaacttcagtagc |
37940159 |
T |
|
| Q |
618 |
cacaggttcttcttttactgtttctgtagcttcagcttcagtatctagaggttcttcttttaccgtttctgtaggatcaacttcagtaaccacaggttcg |
717 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37940160 |
cacgggttcttcttttactgtttctgtagcttcagcttcagtagctagaggttcttcttttaccgtttctgtaggatcaacttcagtaaccacaggttcg |
37940259 |
T |
|
| Q |
718 |
tcttttacggtttctgtaaccttaacttcagtagctgcaggttcttcttttactgtttccgtagcctcaacttcagaagccacaagttcttcttttagtg |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37940260 |
tcttttacggtttctgtaaccttaacttcagtagctgcaggttcttcttttactgtttccgtagcctcaacttcagtagccacaagttcttcttttagtg |
37940359 |
T |
|
| Q |
818 |
tttctgtagcctcaacttcagtaaccacgggttcttcttttactatctctgcagtctcaacttcagtaaccacgggttcttctttcactgtttctgtagg |
917 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||| | |
|
|
| T |
37940360 |
tttctgtagcctcaacttcagtaaccacgggttcttcttttactatctctgcagtcgcaacttcggtaaccatgggttcttctttcactgtttctgta-g |
37940458 |
T |
|
| Q |
918 |
gctccacttcgatgtttttggtctcttccgatatcactgctggctgttcttct-ctcattggcctcgactgtagaatccaacaattgcaattgcttttgg |
1016 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||| |||| |||||| |||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
37940459 |
gctccacttcgatgattttggtctcttccgatatcgctgct-gctg-tcttctcctcattggcctcgactgtag-attcaacaattgcaattgcttttgg |
37940555 |
T |
|
| Q |
1017 |
ttgctctg-ctcttcaaatttttcttgcgatt-tctttccg--tc-tttgttactttcggctct--cgtggccagaggctcaagctcgg |
1098 |
Q |
| |
|
|||||||| |||||| |||||||||| |||| | |||||| || |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37940556 |
ttgctctgcctcttctgatttttcttgtgattctttttccggttcttttgttactttcggctcttctgtggccagaggctcaagctcgg |
37940644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 37940324 - 37940402
Alignment:
| Q |
20 |
cctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttac |
98 |
Q |
| |
|
|||||||||||||| ||||| |||| |||||| ||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
37940324 |
cctcaacttcagtagccacaagttcttcttttagtgtttctgtagcctcaacttcagtaaccacgggttcttcttttac |
37940402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 827 - 916
Target Start/End: Original strand, 37939517 - 37939606
Alignment:
| Q |
827 |
cctcaacttcagtaaccacgggttcttcttttactatctctgcagtctcaacttcagtaaccacgggttcttctttcactgtttctgtag |
916 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| | |||| || ||||||||||||| |||| ||||||||||| || |||||||||| |
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|
| T |
37939517 |
cctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacaggttcttcttttaccgtttctgtag |
37939606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 37940369 - 37940458
Alignment:
| Q |
20 |
cctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtag |
109 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| | |||| || | ||||||| ||| ||| |||||||||||| || |||||||||| |
|
|
| T |
37940369 |
cctcaacttcagtaaccacgggttcttcttttactatctctgcagtcgcaacttcggtaaccatgggttcttctttcactgtttctgtag |
37940458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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