View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5090-Insertion-4 (Length: 1049)
Name: NF5090-Insertion-4
Description: NF5090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5090-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 24 - 480
Target Start/End: Original strand, 33608387 - 33608858
Alignment:
| Q |
24 |
aagttgttaggaacttattcttttatttatttttataaataatacatttgttaaagaagtataacaattgaaattctaaccatatgcttgtggaggcaat |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33608387 |
aagttgttaggaacttattcttttatttatttttataaataataaatttgttaaagaagtataacaattgaaattctaaccatatgcttgtggaggcaat |
33608486 |
T |
|
| Q |
124 |
aagtaaatcttattgcaactaggttggcatcacaacctaaaacacaacaacaataaatagaagctttactnnnnnnnnnnnnncagaaaacatggatgca |
223 |
Q |
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| T |
33608487 |
aagtaaatcttattgcaactaggttggcatcacaaccaaaaacacaacaacaataaataaaagctttactaaaaataaaaaaacagaaaacatggatgca |
33608586 |
T |
|
| Q |
224 |
taaaaccaaatgcatggaaactatttaaacatgtaagaggataggccaaaactatttctg-aaaaatcatcaaataaagtatggaatgagattgacc--- |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33608587 |
taaaaccaaatgcatggaaactatttaaacatgtaagaggataggccaaaactatttctgaaaaaatcatcaaataaagtatggaatgagattgacccgt |
33608686 |
T |
|
| Q |
320 |
-----------cggatcagaaaaataagtaagtgggtgtttgttcccacgttagaatgaatgcagacggtacgtttcatgtgaagttatgatataaagct |
408 |
Q |
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| T |
33608687 |
aggcctatctacggatcagaaaaataagtaagtgggtgtttgttcccacattagaatgaatgcagacggtaggtttcatgtgaagttatgatataaagct |
33608786 |
T |
|
| Q |
409 |
tctttaaattgcggcaatttagtgtctgtttggatgagcggttgcaaattatgttttacttataatcacggc |
480 |
Q |
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| T |
33608787 |
tctttaaattgcggcaatttagtgtctgtttggatgagcggttgcaaatcatgttttacttacaatcacggc |
33608858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 504 - 865
Target Start/End: Original strand, 33608857 - 33609216
Alignment:
| Q |
504 |
gctccaattttcagcttctcaaaatcattgtaaatttacatggaatacagtgcaaatgtgtttttgcttcatcaaacaccacttcaaacaaacacttaaa |
603 |
Q |
| |
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||||||||||||||||||| ||||||||| || |||||||| |||||||| |||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
33608857 |
gctccaattttcagcttcttaaaatcattatagatttacatcgaatacaggacaaatgcgtttttgcttcatcaaacaccacttcaaacaagcacttaaa |
33608956 |
T |
|
| Q |
604 |
tatttgaaattcacgttatagttcaaagaagacataaatgtcccaccaaataaaaatcgagaattgacggaaatttggcaattaagcccagtgaaataca |
703 |
Q |
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| T |
33608957 |
tatttgaaattcacgttatagtccaaacaagacataaatgtcccaccaaataaaaatggagaattgacgg-aatttggcaattaagccgagtgaaattca |
33609055 |
T |
|
| Q |
704 |
ctatcgcaaaactcataaatttatttaatactattgttttgaagaaacataaatttatttaatattaaact-aaccttaaattactgggcctcgctaacc |
802 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||| ||||||| |||| || ||||||| |
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| T |
33609056 |
ctattgcaaaactcataaatttatttaatactattgttttgaagaaacataaatttatttgatattaagctaaaccataaattattgggtcttgctaacc |
33609155 |
T |
|
| Q |
803 |
aatgtcttaaagtttgcaatgattaaggaatccaaaaata-aaattttatcttagaaatataag |
865 |
Q |
| |
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| T |
33609156 |
aatgtcttaaag---gcaatgattaaggaattcaaaagtagaaatttgatcttagaaatgtaag |
33609216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 426 - 603
Target Start/End: Original strand, 31363164 - 31363339
Alignment:
| Q |
426 |
tttagtgtctgtttggatgagcggttgcaaattatgttttacttataatcacggcnnnnnnnccactttaacacaaaagctccaattttcagcttctcaa |
525 |
Q |
| |
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||||||||||| ||||||| |||| || |||||| ||||| |||| ||| ||||| | ||||||||||| ||||| |||| | | |||||| || |
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| T |
31363164 |
tttagtgtctgattggatgggcggctgtaaattacgttttgcttaaaattacggcaaaaaatc-actttaacacataagcttcaatatcc-gcttcttaa |
31363261 |
T |
|
| Q |
526 |
aatcattgtaaatttacatggaatacagtgcaaatgtgtttttgcttcatcaaacaccacttcaaacaaacacttaaa |
603 |
Q |
| |
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||| | | | |||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
31363262 |
aattacggcagatttacattgaatagcgtgcatatgtgattttgcttcatcaaacaccacttcaaacaggcacttaaa |
31363339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 39721300 - 39721344
Alignment:
| Q |
381 |
gtttcatgtgaagttatgatataaagcttctttaaattgcggcaa |
425 |
Q |
| |
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| T |
39721300 |
gtttcatgtgaagttaggatatatagcttcttaaaattgcggcaa |
39721344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 489 - 579
Target Start/End: Complemental strand, 15301154 - 15301063
Alignment:
| Q |
489 |
cactttaacacaaaagctccaattttcagcttctcaaaatcattgtaaatttacatggaatacag-tgcaaatgtgtttttgcttcatcaaa |
579 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||| |||||||| ||| ||||||| ||||| | |||| ||||| |||||||| |||||| |
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| T |
15301154 |
cactttaacacagaagctccaattctcagcttcttaaaatcatggtagatttacaccgaatagtgttgcagatgtgattttgcttaatcaaa |
15301063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 489 - 599
Target Start/End: Original strand, 30872570 - 30872680
Alignment:
| Q |
489 |
cactttaacacaaaagctccaattttcagcttctcaaaatcattgtaaatttacatggaatacagtgcaaatgtgtttttgcttcatcaaacaccacttc |
588 |
Q |
| |
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||||||||| || || |||||||| | ||||||| |||||||| |||||||||| |||| ||||| |||||||||||||| ||||||| |||| | |
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| T |
30872570 |
cactttaacgcagaaactccaattcttagcttcttaaaatcatgacaaatttacattaaatagtgtgcagatgtgtttttgctttatcaaacgtcactcc |
30872669 |
T |
|
| Q |
589 |
aaacaaacact |
599 |
Q |
| |
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| T |
30872670 |
aaacagacact |
30872680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 553 - 599
Target Start/End: Original strand, 24604115 - 24604161
Alignment:
| Q |
553 |
gtgcaaatgtgtttttgcttcatcaaacaccacttcaaacaaacact |
599 |
Q |
| |
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||||| ||||| |||||||||||||||| ||||||||||||| |||| |
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|
| T |
24604115 |
gtgcagatgtgcttttgcttcatcaaacgccacttcaaacaagcact |
24604161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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