View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5090-Insertion-7 (Length: 547)
Name: NF5090-Insertion-7
Description: NF5090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5090-Insertion-7 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 8e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 7 - 176
Target Start/End: Complemental strand, 9798286 - 9798117
Alignment:
| Q |
7 |
agaatgtggctaagttaacaatgatatgttagtagatgtgctttgatcctgtaattgaagaacaacttaaggctgctgctttttgtgtaatagatcgctg |
106 |
Q |
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| T |
9798286 |
agaatgtagctaagttaacaatgatatgttagtagatttgctttgatcctgtaattgaagaacaacttaaggctgctgctttttgtgtaatagatcgctg |
9798187 |
T |
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| Q |
107 |
cataattacttgcgggtagttgggtttggaaatttggtgctaaagggggttgttgtcatttcttcgaagg |
176 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9798186 |
cataattacttgcgggtagttgggtttggaaatttggtgctaaagggggttgttgtcattttttcgaagg |
9798117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 5e-76; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 176 - 324
Target Start/End: Original strand, 45177109 - 45177257
Alignment:
| Q |
176 |
gttgagagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaatttgagcaggttggaattgctaataacac |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45177109 |
gttgagagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaatttgagcaggttggaattgctaataacac |
45177208 |
T |
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| Q |
276 |
tggctatgatgagattcatgatgttcatagcttagtagcatccagagga |
324 |
Q |
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| T |
45177209 |
ttgctatgatgagattcatgatgttcatagcttagtagcatccagagga |
45177257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 45175559 - 45175686
Alignment:
| Q |
49 |
ttgatcctgtaattgaagaacaacttaaggctgctgctttttgtgtaatagatcgctgcataattacttgcgggtagttgggtttggaaatttggtgcta |
148 |
Q |
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| T |
45175559 |
ttgatcctgtaattgaagaacaacttaaggctgctgctttttgtgtaatagatcgctgcataattacttgcgggtagttgggtttggaaatttggtgcta |
45175658 |
T |
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| Q |
149 |
aagggggttgttgtcatttcttcgaagg |
176 |
Q |
| |
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||||||||||||||||||| |||||||| |
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| T |
45175659 |
aagggggttgttgtcatttattcgaagg |
45175686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 176 - 324
Target Start/End: Complemental strand, 45093735 - 45093586
Alignment:
| Q |
176 |
gttgagagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaatt-tgagcaggttggaattgctaataaca |
274 |
Q |
| |
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|||| ||||||||||||||||||| |||| || ||| || || ||||||||||| | | | ||||||| | | |||||||||||||||||||||| ||| |
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| T |
45093735 |
gttgggagttcattattttgtcatttgtagcaaaatgtattgtttttaacgtattgttaccatttgttttagtatgagcaggttggaattgctaattaca |
45093636 |
T |
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| Q |
275 |
ctggctatgatgagattcatgatgttcatagcttagtagcatccagagga |
324 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45093635 |
ctggctatcatgtgattcatgatgttcatagcttagtagcatccagagga |
45093586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 181 - 323
Target Start/End: Complemental strand, 44666689 - 44666546
Alignment:
| Q |
181 |
gagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaa-tttgagcaggttggaattgctaataacactggc |
279 |
Q |
| |
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|||||||||| ||||||| ||||| ||||||| ||||| ||||||||||||| ||| | |||| | |||||||||| || ||||||||||||||| || |
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| T |
44666689 |
gagttcattagtttgtcaagtgtagcacaatatatagtttttaacgtattattatcatccgttttagtttgagcaggctgcaattgctaataacacctgc |
44666590 |
T |
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| Q |
280 |
tatgatgagattcatgatgttcatagcttagtagcatccagagg |
323 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
44666589 |
tatgatgagattcttgatgttcatagcttagtagcatctagagg |
44666546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 181 - 323
Target Start/End: Complemental strand, 44686013 - 44685870
Alignment:
| Q |
181 |
gagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaa-tttgagcaggttggaattgctaataacactggc |
279 |
Q |
| |
|
|||||||||| ||||||| ||||| ||||||| ||||| ||||||||||||| ||| | |||| | |||||||||| || ||||||||||||||| || |
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| T |
44686013 |
gagttcattagtttgtcaagtgtagcacaatatatagtttttaacgtattattatcatccgttttagtttgagcaggctgcaattgctaataacacctgc |
44685914 |
T |
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| Q |
280 |
tatgatgagattcatgatgttcatagcttagtagcatccagagg |
323 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
44685913 |
tatgatgagattcttgatgttcatagcttagtagcatctagagg |
44685870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 249 - 324
Target Start/End: Original strand, 35816689 - 35816764
Alignment:
| Q |
249 |
tgagcaggttggaattgctaataacactggctatgatgagattcatgatgttcatagcttagtagcatccagagga |
324 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35816689 |
tgagcaggttggaattgctaattacactggctatggtgagattcatgatgttcatagcttagtagcatccagagga |
35816764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 242 - 324
Target Start/End: Complemental strand, 45102876 - 45102794
Alignment:
| Q |
242 |
tttaatttgagcaggttggaattgctaataacactggctatgatgagattcatgatgttcatagcttagtagcatccagagga |
324 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||| |
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| T |
45102876 |
tttagtttgagcaggttggagttgctaataacactggctatgatgagtttcatgatgttcatagcttagtatcatccacagga |
45102794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 181 - 324
Target Start/End: Complemental strand, 45568412 - 45568269
Alignment:
| Q |
181 |
gagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaatt-tgagcaggttggaattgctaataacactggc |
279 |
Q |
| |
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||||||||||| ||||||| |||| ||||| | | ||| |||||| |||| | ||| ||||||| | | ||||||||| |||||||||||| ||||||| |
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| T |
45568412 |
gagttcattatgttgtcatttgtagcacaa-atacagtttttaacatattgttatcatttgttttagtatgagcaggtaggaattgctaattacactggt |
45568314 |
T |
|
| Q |
280 |
tatgatgagattcatgatgttcatagcttagtagcatccagagga |
324 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45568313 |
tacaatgagattcatgatgttcatagcttagtagcatccagagga |
45568269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 45569755 - 45569688
Alignment:
| Q |
77 |
ggctgctgctttttgtgtaatagatcgctgcat-aattacttgcgggtagttgggtttggaaatttgg |
143 |
Q |
| |
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|||| ||||||||| |||||||| ||||||||| |||||||||| |||||| || | ||||||||||| |
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| T |
45569755 |
ggcttctgctttttatgtaatagttcgctgcataaattacttgctggtagtaggatgtggaaatttgg |
45569688 |
T |
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