View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5090-Insertion-9 (Length: 649)
Name: NF5090-Insertion-9
Description: NF5090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5090-Insertion-9 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 574; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 8 - 649
Target Start/End: Original strand, 13393583 - 13394224
Alignment:
| Q |
8 |
agttacacatgcagaccttgaaccaaaaagaagtaaaacagatttgagtagcaaaacaggagcttttcttatggttttcacaattctattaggcttactt |
107 |
Q |
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| T |
13393583 |
agttacacatgcagaccttgaaccaaaaagaagtaaaacagatttgagtagcaaaacaggagcttttcttatggttttcacaattctattaggcttactt |
13393682 |
T |
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| Q |
108 |
tgcttcatcttgtgtctcatagccgaagccacacgttccgaggtacaannnnnnnnnataacgatgtctttttatatgcaaatgctagtaattaagttgt |
207 |
Q |
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| T |
13393683 |
tgcttcatcctgtgtctcatagccgaagccacacgttccgaggtacaattttttttaataacgatgtctttttatatgcaaatgttagtaattaagttgt |
13393782 |
T |
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| Q |
208 |
tagggggaagcgaaaatttgttaatactctttccgcgtcccaaccaatactattgggataaactttcaatccggtcattgtcgcttcaattcgttaaatn |
307 |
Q |
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| T |
13393783 |
tagggggaagcgaaaatttgttaatactctttccgcgtcccaaccaatactattgggataaactttcaatccggtccatgtcgcttcaattcgttaaata |
13393882 |
T |
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| Q |
308 |
nnnnnnctaacaattagtagttacataccaccaagagggtaaggatgtgcatgaaattttcatgaagtttaatgtaatttggtggggttgatatgatagg |
407 |
Q |
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| T |
13393883 |
aaaaaactaacaattagtagttacataccaccaagagggtaaggatgtgcatgaaattttcatgaagtttaatgtaatttggtggggttgatatgatagg |
13393982 |
T |
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| Q |
408 |
tgacatggatgaatacaaatggaaaagaaaagggacctaaatctgaatgtgtatacaatagtaatgggaaagtgcctttgttatgtgctgcttctgcttt |
507 |
Q |
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| T |
13393983 |
tgacatggatgaatacaaatggaaaagaaaagggaactaaatctgaatgtgtatacaatagtaatgggaaagtgcctttgttatgtgctgcttctgcttt |
13394082 |
T |
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| Q |
508 |
tgttggactagcaattgctttggttatggagcatacttacatgttgatagcagtgagtaaatcatcaccttctttaattaattgggatcctgattctcct |
607 |
Q |
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| T |
13394083 |
tgttggactagcaattgctttggttatggagcatacttacatgttgatagcagtgagtaaatcatcaccttctttaattaattgggatcctgattctcct |
13394182 |
T |
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| Q |
608 |
tctgctaaatccttaacatggttggctggttttttcttcatt |
649 |
Q |
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| T |
13394183 |
tctgctaaatccttaacatggttggctggttttttcttcatt |
13394224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 361 - 649
Target Start/End: Original strand, 13397038 - 13397329
Alignment:
| Q |
361 |
aaattttcatgaagtttaatgtaatttggtggggttgatatgataggtgacatggat---gaatacaaatggaaaagaaaagggacctaaatctgaatgt |
457 |
Q |
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| T |
13397038 |
aaattttcatgaagtttaatataatttggtgatgatgatataataggtgacatggattatgaataaagatggaaaagataagggagataaatatgaatgt |
13397137 |
T |
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| Q |
458 |
gtatacaatagtaatgggaaagtgcctttgttatgtgctgcttctgcttttgttggactagcaattgctttggttatggagcatacttacatgttgatag |
557 |
Q |
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| T |
13397138 |
gcttacaatggtaacggtaaagtacctttgctatgttctgcttgtgcctttgttggactagcaattgccttggttatggagcatatttacatgttgatag |
13397237 |
T |
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| Q |
558 |
cagtgagtaaatcatcaccttctttaattaattgggatcctgattctccttctgctaaatccttaacatggttggctggttttttcttcatt |
649 |
Q |
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| T |
13397238 |
cagtgagtaaatcaccaccttctttacttgattgggataatgattcttcttctgtcaagtccttaatatccttggctggttttttctacatt |
13397329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 13396585 - 13396674
Alignment:
| Q |
9 |
gttacacatgcagaccttgaaccaaaaagaagtaaaacagatttgagtagcaaaacaggagcttttcttatggttttcacaattctattaggctta |
104 |
Q |
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| T |
13396585 |
gttacacatgcagaccttgaaccaaa---aagtaaaacagatttgagtagtaaaacagtagtttttctt---gttatcacaattatattaggctta |
13396674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 53520006 - 53519958
Alignment:
| Q |
176 |
tttttatatgcaaatgctagtaattaagttgttagggggaagcgaaaat |
224 |
Q |
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| T |
53520006 |
tttttataggcaaatgctagtaattagtttgttagggggaggggaaaat |
53519958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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